Gene detail

Detailed information of PE_Scaf9768_1.4 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf9768_1.4	60S ACIDIC RIBOSOMAL PROTEIN P1	Superscaffold13	13138953	13140998	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf9768_1.4

ATGGGATCTGTCGACGAACTGGCTTGCACTTACAGTGCGCTTATTTTGGCTGACGATGATGTCCCAATCACGGCGGACAAGATCACGACTATCCTGAAGGCTGCCAACGTGTCGGTGGAACCAATCTGGCCATCTCTGTTCACGAAAGCTCTGAGTGGCATTGAGGTGAAAGACCTGATCACAAAGATTGGCAGTTCTGCTGGATCAGCCGGCCCAGCTGCCGCGGGTGATGGTGGTGGTGCGGCACCAGCGGCAGAGGAAGCCAAGAAAGAGGAGGCGAAGGAGGAGGAAGAGGAGGAGGATGACGACATGGGCTTCGGTCTGTTCGATTAGGCTGTCGATGGCATCATAAGCACAGAAAGAAGATGGTGTATTTGCAGCAAATCAATAAATAAGAGTGGCCAAAAAAGCATATAACAACTCAGATTGCACTTATTATGCACATGTGTGTGTGTTTGTATATATATATATATATATATATATACAGTAGATTCGCCTATGATTACTGGCACAGTTTGGGACAACAATAATAACTTGTAATACATGCCCCGTTTTATGACAGGGCAAACACTGTTTTTACCTGATTAAAAAAAAAAAAATCATGGTACTTGAAATATTAACATCCTGCTATCTAAATCTAAGGGTTTGAATATATATAAATGATACACATGTCTTACCTTGCTTTTATTGGGAGCTGAAATAACGAGGTCCCTGTCTGGCAATCCCCCAATTGTACTTTCATACAAGTAGACATTCCCCATATCTGCATCTTGTTTGAATCGTAGCAGCGAATCTGCGAACTCGAGCGACCTCATCCCATGTCTGTCTATCCGAAGTACACTCAGCAGAACCACAGTCAGCTAAAACCAGCGATACAAACATTTGTATGGAAATAAAGTGGTTAGTCTCCTATTTATTGCATAATCTATTTTAACAGTTTTAATTTAGTTTATACTTTTACTATCAGATAGTCTCATTTTAATTATGAATAAGCACTGTCTTTTTATTATACAAGACCAATGTTTTTTAACTATCTACCAAACGTTCTTTCAGGTAAAATTTACATTTAAATCACTAAGTCTCAGGTAAGTATGTATTGTTTTATTGTAGGCTATTTGTACATTAGCAACACTATACACACCAACAGAGTTGTACTTGTACTCTGGAATCCAGCATTTAAATAAAGTACATTACAATTAAGTTTACAAAAACAACTTTTTGATAACAACCAAATTACACATGTTAACTTTATAACATTTCTAAATTATAGAACAATATGGTTCTCTGTCTGTCTGTTTGTCTGTGGTCCCAAATCTCCATTAGTTATGCATGTATGGCACTACAATTTTGCAAGTGATCTATCGGGCTCATTGGCGTAGCTCGTAGATTTAAACAAAATCTGTCGCTGGTGAGGATCTTGAGTTGACGGACACAATTTTAAAATGGCACTTATCTCCGTCAGCTTGCTTGTATGTGGCTGAAATTTTATGAGCGAATGGGTACAGTGATTTTAATCATTTAGAATTTTTTTAATTCCTCCAGCCTCCAGGGGGTGGGTATCTTGAGGGTGACAATGTTACAATGGAATTTAACTCCACCAGTGTAACACGTATGGGGTTGACATTTTGTGTGCAATCTAGCGGGCCCTTTTGGGTGCTTCGTAGGTTTAGACTTACACATTTTGAAATTTGTTCAAGGCGGCTGGAATCTCGGGGGTCACATACTATATAACTATTATACTGTCTATATATCATATAACACACGTCTACTTGGCACACTGTGTATGAAGACAGCAACACTCACGAGAATGTTAACGATGATAGCAAGGAAGAGAAGAAATATGACGACATAGAAGAAGTAGATCTTGCGCCCGCGGATGCCTGTCTTGTGCAGTTGTTCTTCGTCGACATGGACGTAGCCAGCTCGGAAGTTACTGTTGTGTTCCTTGTTGATTCGTCGCTTCAGTTGGCCCTTCTCTCTCATAGACATGTGTTCGCTTGTTCCTCGCTGAAACCACAATTATACTTCAAATATCTAAATAGATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00428	Ribosomal_60s	60s Acidic ribosomal protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027534	Family	Large ribosomal subunit protein P1/P2	Interproscan
IPR038716	Homologous_superfamily	Large ribosomal subunit protein P1/P2, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45696	60S ACIDIC RIBOSOMAL PROTEIN P1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002181	Biological Process	cytoplasmic translation	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan
GO:0022625	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0030295	Molecular Function	protein kinase activator activity	Interproscan
GO:0043021	Molecular Function	ribonucleoprotein complex binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf9768_1.4 global RNA-seq network