Gene detail

Detailed information of PE_Scaf9117_1.0 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf9117_1.0	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Superscaffold12	22139215	22142648	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf9117_1.0

TTGTATATTATTTGAAAGTGTGACGTTTGTTCTTGAACCCTTGCAGGTTTGGGAGACCATTGGGGCCAGAAACCCGCTTCCCGCATACCCGGGGAAATGGAACTCGGATCCCAAATGTTGCAGGTATTAGTCAACTCTTTCTACGTGGCTCACCATCTCATTGAGTAACAATGTTGGTTTAGTAAATTTAAAATAACTCATTCATAATAATTACACAAGCAAGAATAATGTCCAAATGAGACGAACATCACTGTGTCAAGATTTTAGGGCCTATATGTATTTTAATGTGTTGCAAATCGGCTGTTACTTGTCAAGTAAATAATACGCGTATGCCGTATGGTACTATTACTATATAATAATTGCATAAATACAATGACAGTTTACATGACAGAAGGCACTGTGTGATATTGGATGCAATAAACCATCCAACATGGGTGAGTTGTGGACATTCGTGGAAAAATCTCTCACGGGTTACTTTCTTCAATCTATTGCCTGAGTTCATTATATAATTTTCACACAATCATTAATTTTGTTAATCACGAGGTATGCCCGGAATTTTGAAGATACGCGTAGGCATATAGTCTAACAGGTATAGTAAACACAGTATTACACTTTCAAGAGAAAACAATTGCAGTTTGCTCACATATGTGTATTATATATATATATTCTAAATACAAAAAGAATTACAAATAGTTAAATTCGTTACTTTTTTCTGTAACTCTATTTCTTGCTACATGCGTGGTACATTCATGGAGGTTAAAAATCCAATGCCATCTGAATTAAATAATGTTTGTTACCCCGTCATGAATTGTAGAAATAAAGAAGTAGCTATAACGGTACTAGTTTGGCCGTCAAACTTAACGAGTAGCTATAACGGGAATAACAGATAGCTATAACGGGAAGTAGATATAGTGTGAAGACACCGATTCATTGCCTCGCCGTTCTGCCGCCAGACGCTGGATGGTTTCATCTTCGTCGTCGCGCCGGACGGCAAGATCATGTACATCTCGGAGACAGCCTCCGTCCACCTCGGCTTGTCGCAGGTAAGTCTGCAGCTGTGGCGCGTGGACGGTGGGTGTAAACAGGCAAACATCAGAGTAAAACCACACTTGCGAATAAAGTTGCATTAGAGTATATGCAAGCAAGCACGCACGCACGCACGCACGCACGCACGCACGCACGCACGCACGCACGCACGCACACACACACACGTACGCATACGCTCACGCACGCAAGCGACGCAAAAACACACACGCACGCACGCACACACGCACGCACTCACACACACACACACACACACACACACACACACAAAACACACACAAAACACACACACACACACGCGCGCGCGCGCACACACACACACACAAACACACCACGCACGCGCACTCTCACTCACTTACTCACTTAGTTACACATATACTGTAATGTATGAAGTCACGTTTCATTGAATTTTTACACACAAAATGCCGATATATATGCTAGTTTAGGACGCAATCTGTGTCATAAAATCGTTAGGCCGTCTGTAGTCCAAAGGTTTAGATGGAGGAAGTGCAGCTTCCGGTGTCAGTGCACACAGAACTCCAGTCAGACTTCGCAATGTCGGTGCGTCCAACGATGTTGATACCTGTCTCGAGTAACGACGCCTGACGACATCGACAGGCCTACTTGTTTCACGATTAAAACATTCGCAATAATTATTAGGATAATTCTCTACACTCGTTGCTGTACATGTCATTATTAACAGTACAATTATAACCGACGCCGTGGCGAATTGTTACAAGAGCTTGAAGTATATTTACTATTCATTAGAAATTATGCCAAGGAAATTCAAGTCACACCCCGCCCTCGTCTCATATCTCGCGTGGCGTGTTTGGTTGTTGGATTACCATAGTGCGGTAAGGCATAGTTCCTAGGCCGGCGATCGGTAGATACAAGCGTAACATGTTATGATATCGAGTTTAATACACTCCATACACGGGCTTTCATTGCTATGTAGGCTTACAGTACAGGGATGAAGTTTGTCGGTCATTGACTGATAGGAATTAGTTCGGGTTAACCGAAGAGCACAGGTGCTAATAAATGTATGTTAATTTATGATCAAGAATATATGTGCAGGTTAGTTGTCGGTACATCTTATAATGTATAGGCCATTATTAAAAAAAACTGGTACGTGTAAATAGAAAATAACTCGAACAATTAATAAATTATAAATTATATCAAAGCAATGGCGGTTTGTGACACGATAGACATATTTTTAATTTGCCTATATATATGTATGTTATATGAAACTGGAAAATGCAAATATGCCTAATTATACTATTTGATAACAACTACACCTGTTTAGTCTAAGGCTCTCGTTCTTTAAAAAGAAAACTGTTTTGCTTTTACACCAATTCTGGGGTCTGCTGGAAGAAGACGAAAAAACACACGATGGGACTGTTTTAGGCCCAATTACATGTCACCAAATTTAATGTTCTCAGTTATCACGTTGCTCACAGTCTGCCATTATGTTTATAATTTAGAGCGTGATGACATCGGTGCGTTTCTTCGCGGCAATGTACCCACCTTTATAGGCCGCAGAAAGGGAATGTACAGTTTTCATCAACTGGCTCAACTTATCACGAACCCAGTGATGTCCATAAACAGGGCCTGTATGTAATGGGTGAATTGTTTAAATAAAATAAAGTCCGTACATTTGCTTAAATGGTAACAGTTTTTTTAATCACGTGAGTGAATTCTTGTGCGGGAATTAAATAAGGTGATATTTGTCTGATGATTTCACCAGAACTCGACTCTACATCCTAAACATGCAAAAGTTGAAAGAACGAAGTTGATACTATAATAGTTTGTGTTCGCAAAAAGAATGTGAAACGAAAAGAGCGGACAAAAATCGAACTGAGGAGGAGGATCGGGAGTCCATGTACCATAGCCCGGGAAATGGATGCCCCTAAAATGTAATTTTATTGTATTGAGTGAGTTGGAACTATAACACAAAACACACACAAACTCTTCAAGAAACATGTCCAAACCTTACTGTCACAAATCAACAATGGCCTTTTATATATTGTTACGGTTGTTAGCATTGTTGTGACAATTCTCTTGGCACAATTTTGTCTTTCAGAGTAGTACAGTTTTAGTTACATCAGTGAACCACATCTATAATGTGTAAATCATTGAACACATAAACAGTTCCATTTTCACAAGGGATCCATTTACAATCTCACAGCGGCACCTATACTTCATGTGTCCTGTGTTAATGTCAGGTGGAGCTGACGGGGAACAGTATCTACGAGTACATCCACCCAGCCGATCACGACGAGATGACAGCGCTCCTCAATCTCCACCAGACCTTCCACACTCACATTCCACAAGGTACTTTTCTTAGCTGTGGGATACCCGTTGGGTGGGGTGCGGTGTATGTCTGTGTGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00989	PAS	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014	Domain	PAS domain	Interproscan
IPR013767	Domain	PAS fold	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23043	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf9117_1.0 global RNA-seq network