Gene detail

Detailed information of PE_Scaf9104_2.12 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf9104_2.12	PROTEIN PM1	Superscaffold5	20597620	20602534	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf9104_2.12

TGCGCGTGCCTTGGACGATAATGGCGGATGGTGGGGAAAGGTGAGCGAAGTGGTGTTTCTTTCAAACTATCTTTCTGCGTCGATTATGTGCAATGCAACATACAAATAATAAAGTGCGCGATGGTGTAGTGGTAGCACATGCGCCTGGCATGCCATCGCTCTGAGTTCAAAACCCGGACCGGGCAGGCATGTATATTTGGTGTAAGAACCTGGCTATCGCTCTCACTCGAGAGTCGAGTCACTGTCTCGGGCCAGCTTCAGTTCAGACTCAACATTGTCATTGCATTGGGGTGGTCTGTGTTATCGCTCGTGACTCGGAGATCACGGTGATGTCGGTCCCGTCTCAATTTGGGACGTAAAAGAACCACTGAGGACGACATGCATCCTGGCAATGACCACCTCCAGTGTCAACACAGAAAGGTCGAGTTGGCGATAATGTTCTAAAAAAAACCAAAAAGGCTGACTAGTTGAATGAGACCTTATAACTAGACCACATCATAGTAACCACAATTTGGGTTTCAAAACTGACAAAAGTGCATTAGTACACACTATTTTTTTAATATAAATTTGCCTGGGATGATGTTGAATGATGGAATTAATGCTCTGAGGTATCAAAGTTAGGCAAAACACAAAAGTTATAAAGGCAAAATCGAGGTGAGTCCGGATACTACACAAGTGCCAGTTTTTATATATGAGGTGGAATTAAACCGAATTAAATAGCTGATGTGGAAACTAGTCGACAGTCAGTTGATCGAAGTGCGTGGCGCGGCACGTATGGTGAAATCAATGACGCGAAGTAGGCCGGCGTCTTTTCATGAAGAGCGGTGAACACAAGCACGAATATCTTATACTGGATGCGCCACTTCACCGGCAGTCAGTGCAGGCTATTCAGTGCTGCCGTAATGCTCTGTCGATCGCCCTGCCTAATACGTAATATGACTCTGGCCGCAGAGTGTTGTACCATCTCAAGACGGTGGACTAGCCGGTCAGATATTCCGTACAAAAAAGCGTTCCTGTATTATATTCTTGAAGTAACAAGAGCATGTACGAGACACTTGGTTGTTCCGGTCGTTAGTGTGTCGCGTATACGTGATATTCGGGGCACGCAATTGCTACTTATGCTGCCATCGAGAGGTCAGCATCAATAGTAAAACCGAGATCTCTGATGACAGCACATCTTGGCACTAGCTGACCGCAGACATCGACATATGTTAGTGTTATTGGCACGCAGAGGGTGGAGGATTTGTTGATAATGACCTGCGATTTAGACCGTTTGAGTATTAGCCCATTGTCGCAGACGTTGACATCTTGAAGACAGGCCTCCATACACACGAGTGCTTCTGCGTGATTGGTTGGTGGAAAGTCGACGTACAGTTGAGTGTCGTCAGCGTATAGATGATGTTGTGTACCATGTTATAGGAGAATTTTCGCTAGTGGCGCAATGTAAACATTAAATAGTATCGGTCCAAGGACCAACCCTTGTGGAACATCGGTCTCTCTCCGATGTTTCTTTTTTTACGCGTACCACAGACGTTCGGCCATGCAGGTTGCACGCTAACCAAGCATGTGCTGCACCACAGATGCCATAGCTGTGCAGGCGTCGCAACAGAATAGCAAGTGTATTGAATGCAGCAGAAAGGTCAAATAGCACCAGAAGTATACCTCGACGTGCATCAGTCGACTGCGCCACGTTGTTGTGGATGCGCAGAAGCGCTGTCTCGGCGCTATGGCGTGGGCAATATGCGCTCTGGTAGACTGGATATATATGCCGTTTCCCTCGAGGAAGTGTTGTAGTTGTCCGTCTTGTCGTGCTATGAAATGCTCTGAATCAAGTGAAAGAGCCAGCCCATAACCATGGCACAACCACAGGACAATGATATATCGTTTTATTGCTGCATCGCGATAGATGTAAGATGATGTGACAACAATGTACTATAATTTGGCGATCTTTTACTTTCCGACCTATCCATGAAAATTACCACCAGCTGCGACTAGTAAAGCGGCACTGTATGCAAAACTGCCCACCTTTTCACATATATATATATGACATACATATACACACAGTATGTTGTCAAGATATTACACTTACATTCTTGTACCGATAAAAAATTCATCAACAAATTAAGGCAACTAAAACTTGACATCTCCTGTTGTGGCTATGTGCAGCTAGCTTGATGGCTACCGTAAAATCGATATTGTGTCGAGGCATTGCACATCCACAGGGTGTCTATGAACCTCGTTTACAGCGATGCCATCATGCCTTGACACGGTATCAATTTTACGTTAGCCATGGAGGTATGCGTAGCCGCCAGAGAACACCAACAATCGTCGACGATCATTCATGGATTCACCATTTTGGGAATCAGTTGCCTCCATGGCCACACTAGGACATCACCCTTACATTATGGCTTGGGCTTTTCCTGTGTATTCACAAATCCATGATGCTATCGTGATGCTATCACAGTAGTTATGACACTATCACGATATTGCAATAGTAATATAGCAATATTATCACAGTAGTGAATTTAACTCAGAATCACCTCTAAAATCCAGCAACTTCAAGTTGAGGAAATAGTGTACAACACAGTAATGTAACTAGACTTAGAATATGTGTCAATAGCAGGAACACCTTACAGCCAAAACAACATTAATTGGCATTACAGAAAATACAATCAAATCAAGTTGATTTTGTTTTAAATTAGCACTGCCTTACAATCAGAATTACTGCCTGCTCAACAAACCTGGTTGGCAGACACAGTTGTGAAACAAGACTATTAAAACATCACCATTTTGTGATCTTCTACAAAGTAAAACACAGCCTACTGAACACCACGGTCCCACCATATCTTATAGTCCCAAGCACCTATGTTCAAAAAGAGTGATCCAGGCGATTATATATTAAAATAAAATAAGCATGCATAAATTCACATGTGCAACCCCATTTTACCCAAGAGTCAGAAGAGCCTAGAACTTACTCCCTACCAAAGTAATAAGCCTTCAATCAACAGATAATCAACTTATTCCTTCCAGCATGCTGTGAGCTCAGTGAGTTGTCTACTTTACTTCAGCGTCACGTCTAATGTTGTACAAACGTGGGCAAACTGATAAACTCAGATATATGTACTTTAATACCTGGGTAGTTTTATTTTCAATAGTTTGTTCTATTTTATATAAATTTATGTAATTGGGTAATTTATTGTAAAGATGTTCAACTTTTTTGGTAGTGAAACCTGTATGACTTCGTTTGTAGGCCACCTCCATCTCCACAGAATGATTACGTCATCATCCACGAGATCTACGACAATGACAGCGCGTCGGAATACTTTGAAAGTGAACTGGAGCAAGCACTCGAGACTTGCATTCGGACGATAATCATCGAACCATCGAAACTCGGCGATGAAACCGCTCGTTGGATTACGGTCGGCAACTGTCTTCACAAGACATCCGTGTTGTGTGGTCTCGGGTGTCTGGTGACGGGAATCACATGGCCAGACAAGGGGCTAATCTACTTCCCACTAGGCTTCTGCAGTGTTGTGTGCGCCGGCGTTTACACCGTCTCGTGGCAGTTTGACCCATGTTGCAAGTATCAGGTGGAGTACAATTCACACCGACTCCAACGATTGCCTCTACATAATCTCACGTCGTCGTCGCCAGTCGTATTGGTTCGGAAGGACGACACACGTAGGAAAATATTACATAATCTCCTCGCTGGGCTATCGACGGCCTACTGCGCCTGGAGGTTTTACGACTGGTACTTTGAATAGGCGGACGCACTTGCAGGGTTCTGTAAATATAAGACTGGATGTTAGCCGATAGTGACCGGCAGAGGGAGTCAACTGCTTCCTTTCCTGTCTATGCTGAAGTGTCGTCCATCACTGCGGATATATTATGTAGACATGATGTTTGTTGAAACTATCTATGCAATGTTTTAGGCTGTTTATTAAGAACACTGATGTTACACTGCATGTGGTAGAACGTTGGTGAATCGTGGCTTCCTTGTAGGCTAGTGACAGCTGAATTTTTGTTCACTTCGGAACCTTGAAAGTGTGTTAAATGATGGATGTAGAGATAAGAATCATCTGTGTTGTACAACAACTGTCTTCAGTACATCAAGTGGATACTGAGAGGACTGCATTTTGTTAGATAGTATGCAGTCTCGGTGAGTAGCCCGAGTTGCTATATTTTATATTTAAGATTAAGGTTGAAGCAGTTTTCCTGCACCAAAAGGACAATTATGTGCACAGTCAAATTTCCTGTAGCTTCACAGCACTCACAACTAACTGCAATCATTGATTTATTCTGCACCCTCAACTAATGGCTAGTTTATTTGTAGACTTGGTTGATTTACATGCATTTAGTGTGTGTTGCTTTTGCAACCAGTGTAACAATTTTTATTTTCCATGTGTTAGTGCTGACCCCTGGTGACCTGGTAAACCTGTATTGTGATTTTCTGCTGGTGACACTGACAGCTGAAGATGTTTGTGTGAGTTTTGAGTGGATTTACTGTGATGTAGAAGATAGGTAGACCTGTTGAAACCGGTTTATTAAGTTCCGAGGTTGAGAAAAGATTGTACAGTGAAGACAGTGTTCAAATGAAACTTTACAAACTCAATGTTTTGTCTTTTGATTCTGATCTGTTGTCATTTAATGTCATCATCTACCTACCCATCTGCTTATACTGTAGTCCCAGCGTTTCTCAATACTACCACAATGTTGATTTTACCTAGCCAAGCTGAGAACCTGACTATCCTAGCTAGGGTGTCTGTTAATCTGCAATGTATACAACATCACAATCCGGAGTGGTGTGTAATTGTTGTCTGAAATATAGACATTTTATGGCTTTGGTAGAAGATAAGAGATCATCTCAGAACGTCAATGTCCACTATATGAGGAAATTAATTCCGTATGGGGGAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14972	Mito_morph_reg	Mitochondrial morphogenesis regulator	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026120	Family	Transmembrane protein 11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15099	PROTEIN PM1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0007005	Biological Process	mitochondrion organization	Interproscan
GO:0007007	Biological Process	inner mitochondrial membrane organization	Interproscan
GO:0031305	Cellular Component	obsolete integral component of mitochondrial inner membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf9104_2.12 global RNA-seq network