Detailed information of PE_Scaf8880_3.4 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf8880_3.4COATOMER SUBUNIT GAMMASuperscaffold13554602635570868+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01602Adaptin_NAdaptin N terminal regionRepeatInterproscan
PF08752COP-gamma_platfCoatomer gamma subunit appendage platform subdomainDomainInterproscan
PF16381Coatomer_g_CplaCoatomer subunit gamma-1 C-terminal appendage platformDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR002553DomainClathrin/coatomer adaptor, adaptin-like, N-terminalInterproscan
IPR009028Homologous_superfamilyCoatomer/calthrin adaptor appendage, C-terminal subdomainInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR012295Homologous_superfamilyTBP domain superfamilyInterproscan
IPR013040DomainCoatomer, gamma subunit, appendage, Ig-like subdomainInterproscan
IPR013041Homologous_superfamilyClathrin adaptor, appendage, Ig-like subdomain superfamilyInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR017106FamilyCoatomer gamma subunitInterproscan
IPR032154DomainCoatomer subunit gamma, C-terminalInterproscan
IPR037067Homologous_superfamilyCoatomer, gamma subunit, appendage domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10261COATOMER SUBUNIT GAMMAInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000139Cellular ComponentGolgi membraneInterproscan
GO:0005198Molecular Functionstructural molecule activityInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0005793Cellular Componentendoplasmic reticulum-Golgi intermediate compartmentInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0006888Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0006891Biological Processintra-Golgi vesicle-mediated transportInterproscan
GO:0009306Biological Processprotein secretionInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0030117Cellular Componentmembrane coatInterproscan
GO:0030126Cellular ComponentCOPI vesicle coatInterproscan
GO:0072384Biological Processorganelle transport along microtubuleInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf8880_3.4 global RNA-seq network
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