Gene detail

Detailed information of PE_Scaf8672_5.6 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf8672_5.6	RIIA DOMAIN-CONTAINING PROTEIN 1	Superscaffold1	29842273	29844506	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf8672_5.6

ATGTATAAGTCCTATTTGACAGTGTATGTTTTGTATGTGGCGTTCACATTTCCATTCGTCATCATTTCTCAAGTCTCGCCGTTTCTCGTTGCAGGTGAGATCCGCTGCTACTGCAACGACGCGAGCTGCGTGGCGACGGGCTACATGTGCAAGTCTCCGAGCGGCCGGTGTTTCTCCCACCTCACCTACGAAGGAGATGCCTCCCGCTCAACCCACGGGTGCGCCGAGTCCCTGGCCGGGGAGGACCGGGAGGCGTGCGACGCCCCCGGTGACGTCATTCACACGAAGGGAGCGGCGAATATTTGGCCGATACTGAAGTGCTGTCAGCGCGACATGTGTAATTACATGGATGACGTAGACGTGCAGGTGTATGTTGGCACGCAGAACAACGCGTCGGCGCCCGTTAGAGGTAGGTGCAGATCACGGTTTTTTTGTTTTGTTTGTTAGCAGCAATGTCAAACAACCAATCAACGCCATTATTTTTCAAGAATATTAATGTAATGGTGTGTCTACGGGGGTCACTGGGTAAAGGCCGCCTTGCTTTGGGTTGTTCAGTGTTTTCTTGTATAACGTGTTGCGCTACTAGACAGCATAATGACCAATTAAGTTTGATAGTCTTTATCTCCGCGAGATCCCAAATACGCCAATAATTAAATATGATAATAACCGTTGTCATTTGTCGCACAGGAAGACCAGTTTTTATGTTTTACAAATGTTGCTTATATTTATTCAACCGTCAGAAGTTTGTGTTAAACATACATTTTACGCAAGAAACCCTAGAAATAACTGTTCTAGAACCAATGCTAACGCACGTCGCATACTCACACTCTCGCACACATACACATGCACGCACACATACATACATACGCACACGCACACGCACACACATACACACGCCACCCCGCCACCCCGCCACCCAACCCTCACACCGTCTTCGTTTGATACCTTGATGCCCAAATGAGCCACAATCCGCCACCTCGCGGCACTCGTAGTTAGCCATCACCTGCTAGCCGCCGTCTCCCGGCCGCCGCCGTAAGACGCTCCCCGCCTGTCGAGGCTGTGCTAACATTGACATAATTGTCATTGTATCGACGTTAGTGCCGCCGTCGGCTGTCACGCCCCACTATAGTCACGCTTGACCTGTCGTCGCTGACAACTAGCGGCAGTTGTGTTCACGCACTGTTGCCGAATCCTCCAAGGCTACGCCAGTCGGATTGCTGTTTTTCTATACAGTTTTCTTCTCTCCAAAACGCCCATGTTCTGTATTATAACACGGGGACTATTTGGCGTTAAGTAAAGATAAACTGTTGTTGCACAATGTACATCTAGGTGTTTTTAATAGCGGCCGGTATTCGTGCCAACCAAAGTGTTACTATAGCTCTCGTCTTTGTCTCTCAAGTCCGGGGTGAGGTCGATCTCGATCGTGGTCAGCCACTCTTGTTTTCCTCCTTCTGTCAGTGACCTAGTTTAACTGTCATCCCCACCACCCGTCTCTACTCCTTACATCTCCTTCTAAACGCTCGCAATATCGCCCGTCACATATGTTCTTCCGATCGCAGTCGCGGTCTTTCTCTTCTTTTTCCACCTTCCACTCTATGGGCATCCGTTCTCTTCCCCTTCCATTTGTCCCACCTATCCAGCCACTTTAACCAACTCCTTACCAGCTTCCTCCAAAACCTTTCAATCCAAGTAACATGTGACACATACATAGATGGAATGGCTATATGTTGACCGTTATTTTCTCGTTTATTTCAGGTCACAACCCTCGCCACTCTGTATCACCCCCAGACAGTGACGACTACCGTTACGTCGACTACATCTCGCAGCGCGATCTCTGGTTCAAAGCCGCTGTCATAGCCGTTCCGATTGCCGGCGGCTTCATCCTTATTTTACTCGTGCTGCTCGCTGTGCGCATGCTCCGCCACGACAGCAGACGACACAGACGATTAATGCAAATGAACCGGCACAGCCGGAGTCTGACAAAAGCGCAACTCTATGTTGCCGATCACTTTTATAACTCTGGCGAAAACAAAGACGCCGATCTCAACTATAACAGCCGCACGCATCACACCAGTATTTACGTCGATCCGACGATAAACGCGGACACGGCCCCAGCTCCCGGCGGTTACGCACGGGTCAGCAGCAGCAGTGAAACTGCGGAGCAGGACGGTGTTGCGAGAACAGTAATCCGGTGGGGAGAAACGGGATCGCCCGGCACGGCAACAGTCGTGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06211	BAMBI	BMP and activin membrane-bound inhibitor (BAMBI) N-terminal domain	Domain	Interproscan
PF19337	BAMBI_C	BMP and activin membrane-bound inhibitor homolog C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045806	Domain	BMP and activin membrane-bound inhibitor, C-terminal domain	Interproscan
IPR045807	Domain	BMP and activin membrane-bound inhibitor, N-terminal domain	Interproscan
IPR045860	Homologous_superfamily	Snake toxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15505	RIIA DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005109	Molecular Function	frizzled binding	Interproscan
GO:0007179	Biological Process	transforming growth factor beta receptor signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf8672_5.6 global RNA-seq network