Gene detail

Detailed information of PE_Scaf8553_1.6 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf8553_1.6	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Superscaffold12	8544755	8551210	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf8553_1.6

ATGGTTGACTTCCACACCCAGTGCCTCCAGCGAGGCTGTGTGTGCTTCCCCGTCGAAGTACGTAGGCCGGCACCATCATTCAGGGACATCTACCACAAGGCGGCGCCAGAGGTCTTCAAGACACCACGTGTGCAAGGTGCGTGGCTTTGGAGACGTGGGGATGACAAAGAGCCTTTGTTATAATGCTTTCGGTTCGTTTTTTTATCGTAAAATCATGTTATATTTAATATAAACTGAATCAATTATAACATACTGCACTCCCAAATATGTTTGTTTAACCAAGTCTAACATACATTTTCATTAATAATACTTCGTACTACTTCCAGCAGTGCAGTACGATCTAAGTATTCACGTAAGATCTAATATCTGAATGGTCGGATTATGGAAATAACCAGTGAAGCGATGGTCACAATAAAGTTCCCTATAAACCAGAGATAATCATTGTGTATGGCTTATGCGCCAGATTATAAAGATCAGCTTGGTAGGCGGTTTTAAGAATTACAACGCACTAATAGCTCATAGCAGTGATACGATGCTTATAATCACAACAACAACGATATCAACAACAGCAGCAACAGTAATTGACAAACAATGGTATTAGTAATACAAACAACATCAACAAGTATTGTTCTCCCTCTTCGTTCCACTGTAGGACCTACATAGGTGTGGTTTACCCTTGATCGTTCCTTAAGCTACATTGCATCCCGATCTCATCATCCAATGATAATGTTTATCACAGAGGTCTGATAACATTTCCCTTCATTGTTTACTTGCAGTACACGACTGTCGTGCCCAGGTGGTGCAGGACACGAGAGACCCTCACTTGTGGGAGACGTGGCTCCTTTCCCACGGGGTGCGTAAGACGGTGGAGGGGGTGCATGCCATCTACGCTCGGGAGAAACTTAAGGAGGGAGAACGAGAGCCGTGAGTGATGTTGTGTACTCGATAAAACGCCTTTAAGACTGTCTATATGAAGTATGCTTACACTATAATATGTCCATTCTGTCTTAATGTACGTAACCAAAACGTACACACTATCGTGCCCTCATATATATATATATATGCAGCATACTCCAACATGAAATATTTTGTCTACGGATAAACAATCATTGCACACATGTACTGTTATTTATAGATACAAGTTGCAATGAGACAAACAAAACATGCTGATGTTTCCAATTATGTTGTAGACCCAACAAGTTGCAATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCAATGAGACAAACAAAACTTGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCAACGAGACAAACAAAACATGCTGTTGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTCCTATTATGTTGTAGACCCAACAAATTGCAATGAGACAAACAAAACATGATAATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTCCTATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTCCTATTATGTTGTAGACCCAACAAGTTGCAATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTCGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCAACGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCAATGAGACAAACAAAACATGCTGATGTTTCCTATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCAATGAGACAAACAAAACATGATGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTCGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGTCGATGTTTCCTATTATGTTGTAGACCCAACAAGTTGCAATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTCGTAGACCCAACAAGTTCCTATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTCGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCCGATGTTTCCTATTATGTTGTAGACCCAACAAGTTGCAATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACACGCTGATGTTTCCTTTTATGTTGAAGACCCAACAAGTTGCAATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTTCCATTATGTTGTAGACCCAACAAGTTGCTGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACACGCTGATGTTTCCTTTTATGTTGTAGACCCAACAAGTTGCAATGAGACAAACAAAACATGCTGATGTTTTCCATTATGTTGTAAACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTCGTAGACCCAACAAGTTGCTATGAGACAAAAAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCCGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAATTGCTATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAATTGCTGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCAATGAGACAAACAAAACATGCTGATGTTTCCCATTATGTTGTAGACCCAACAAGTTGCTATACAAGATTGGAAAGCGCGGAAGTGGAAAAGACGGTTTCAATTTCCCTCGCGGAGTCGCCGTCAACACGGACGGAGACATCGCAGTGGCCGACACAAGCAACAATCGCGTCAAAGTTTACACTCAGGTTATACAGATATCAAATAATTATTTTACTAGCATTTTATTTAATTGACATACCGAACTGTCGTGTACAGTAGACAATTCGATTGTTTCATAATCGTCATAATAATCGAGGCTTAATATGTTGTCTATTTGTTTTACAATGTTCGTAATAATTTATTCGCGGCGCCAGTTGACTGATATTGATTTCATTCTTGCCTCCGTTTCGTGACTCTCCTCTTGACGACAACTGCCACATGTTAATGCCATTCGCTCTCGATCACCATTTGAAACAGCGCCTGCTTACTGGAATGTAAATCTTATAATCCACTCAATTATCAACATAATTATAATTATGCTGATTGAGTTAACGTGCTATACAATATACACACGGATGAACATGATAGGATTCTCTATAAGTCAATGACTCCCGTGCCTATTTATTATACAGAGTGTATCGCTTTGTGTGGCAACCTCTTTAACGTTGGTTAATTTATTACACAATGCAATTTTGCCTTTTGCATTTCATTACAAAATTAGTATGTTCTTTTAGTACTCTTGCTAGTTCTACGCAATAGGCATGCTCTGTTAAAAATTAGTCTCTGTATGCACACAGCTAAAACTTGTTTTGATTGACAAAAGGCCACAACAGGTCATTGCGCACATTTTAATAATAACATACACTGATCTTTAACTCTGATTACCATATTGCGAGTTTCATCAAAGAGCCTTCTCTGCAATGACGTGGTATAACTGATTGTGTCCTAGGCTGGTCTTCTGCGCTTCGTGTTCGGGACACAAGGCTCCGGCACCGACCAGTTCGACTGCCCCACCGGTGTCGCCTTCAACCGCAACGGGGACGTGCTGGTGGCCGACCGCGGCAACAAACGGGTATCTACTTGCAGGCGAGACGGCAAGGTTAAGTTTGTCTTCGACACGGTCGACCCGCCGTGTGCCATTGCTAGTGACGCAACGTTCATGATCGTCATCATGTCGGTCAGACGCACCATTGAGATCTACCGGAAGCGCGGGAAGCTGCTTCACCGGTTAGTGCGCATGACTGTGAGATTCATCCGCCATTGCGTAGCAAATGTGGGTTGCGTGTGATGTATTGCAAGGTAGTTTTTTTAGGGGTGACGTTTGGGGAATGTTCTACTGTTGCTGCATTATTACTGTAATGATTATTCCCATAGTGATATGACTATTGCAATAGTAGCAAAATTTGTGTGTGACGTCAACGCGTGGTTTCAAAATAGTAAATCCGTGAATAACACAGCTATTGTCGAGGATTGTTGATGTTACGTCGATAAATAGGGAAATTACAAAATTTAATTGAAAAAACATATCTACGATCTTTTTATGTTGGCACAAGTCACAACTAATTGTAGTTTAATATGAATTTTGTTCTTCCGCTTGGATCCCTAGTACATCGATGTGATCTAGTTCCGGTGCTGTTGCAGTGCTTTTGTAGTAACTGTTGTTGCCTATGCTGCTCCCCGTCAGCTGTTCTTTCCCACAACTGGTTCCCATGATCAGCCCATCTCCACCTTTCATACGCGTCATCCTGAGAATTTCTAAAATCCATCTTTACGAAGTCCTCCCATCTCAGTCATGGTCTTCTCCTCTTCAATCGGGCTTGGTGTTACTCCTTTGCCACACGCTGTCGAACCACTGAACATTTTCATTTTCTCCACAGCTTCTCCATTGCCAGCGACTGTGACGGGTACAACGGACGAGGACCTTGCGGGCAGATCGCAGTCAACGACAAGGACGAAGTGATCGTCCTGGACGCGCCCAACAGGACCGTCAAGTACTTCACCTACGAAGGCGTACTCCTCTACCAGTTCCGTCCTACTTCCGGCGCCGAGGGCCTTGTCCTCGAGCCGGTTGGCATGTGCATCGATCCGATCGGTCAGGTGATCATATCGGATCGCTTGAACCATATCATCAATCTTTATAGCGAACGCGGGGTACTGCTGCGGCGACTTCTCGGGCCCGTAGATAAGGCAGGGTGTATACAAGCGTGTGTCATCACTCCACAAGGGCACCTGGTGGCAACAGAGGCCACGCTGACCGGGCAACAGTCGCTGAAGATCTTCCGATACGGACAGTGCGAGTGTCACAGAGTGAAAGGCGATTGACAAGCCAAGTGGCTGCTTGTTCAACAGCGCAACGCGTCTAACAGAATTAGGTAATTAATCAACAGTATATTCTAAGTGAAAGACTCAATATTCTCGCTATATGGACTCCTGGTGTATGGAACATCAGCTTCAAAGGAAGAATATGTGTTACCTACCCGCGGATACAAGGAACATTTTGTTCCTTATGACGAAAGCAAATCGGACTCTCAATCAAGAGAACCCGGGTTCGTATCACGTGTAGCCATTTCGAACCTTGGGCAAGTTCGTTTACTTTGCATTGCTCCAGTTCACTCAACGGTATGAACGAGTACCTGGCTATAGACAGTAGTGAATATTTGTGTACGAATAGTCTTCACGCATTAATTGCCGCATGGCTGAATGCTTCCCAGAGATGTCGAAATAGTGATCGATTTAACAGATCTGCCAGAGAATAAAGTGTAAAATGCTTTGAACTACTACTGCTCTATATAAGAACTTACATATACGTTTTGAACAGAAAAACGCTGTGTTTAAAATCGCTGCATTTTGTTTTTGTAACATGATAATGTAATGAACTGTTATCCGTAACAATATCGTTTGATAGTTATTGTGTGGACTGATCTGCAGACCCCCGGTACAAGTATTTAATCTGCATTTATATGCGTGCTCATAACAATCAGCTAAAATTATTAGTACACAGGAGTAAACTGTTATTATTTCATTATTACGTTGCATTGAATTATGTTATTGTTAATATGAATTTTATTTTAATTTTTAAAATTTTATTGTACTAGGCATGAACACAGTTTAAATAAAACGAATTTTAAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf8553_1.6 global RNA-seq network