Gene detail

Detailed information of PE_Scaf8420_3.3 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf8420_3.3	DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A	Superscaffold2	69604616	69608317	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf8420_3.3

ATGCGCCTTCTTGGTCAGTTGGACTGTTTAGACAGGATTCGTCAAGCGTGACCGGCTTAGCTGTTGATTGACGTTCCCGCGGTTTGGCAATGGTAGGTGGGCTATATAAGCAGATGTGGGTAACAAACTACGACGACTTCAAACGGAGAGACTTGGACAGCTGCTTCGAGGAGTGTGTGTGTCTAGATCACTCTCAACGGAGGCGTCTACATTGTTAACATTCTCACTGTATTCGGATCGAATTTTTTAGATCTTTGCGATAAAAAATCAGAAAGCCGTGTTGCCAGTGTGTCGAACGACTCACATGGCGGCAGTGGTGTGTCATTATCAGTGTGTCAGAGCTGGGTGATCATTTTGAACACTTGCTTCTAGTCGTCAGAAGCATCGGCGGTTTGACTCGTGTGGTATTCGACTTTTGCACGGTATACAGATGAAGCGACGAGCTGGCGCTGGAGGCAGTAAGCAAGCCTGTCACACTCCAGTCCAAATGTTCTCGATCTTCTTCTTCGTGTAGACACCTGGGAATCCACTGCACAGGACCAGCAAAAAAGAAGCAAGAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGGGATGGGTTCAAGTACCCGAGTACTTGAGTACTTGTGTACTTAAGTACAGCAAGTACTGTACTTGCCATTTTGCTGAGTCCAGTACTTGGACTGGGACTTGTACTTGACCATCAAAGTACTTGGACTTGGGAAGTACTTTTTACAAGTACCTTTTTACGTTTTTGTTAAGTAGTTGGGTCTATCAGAAGGATTGAAAAGAAATGGCTACAGTAAAAATTACTGTATATTTATTCTTATTTTGTACAAAGCTTCATATAACACGAAACATAATTGATAGTACTTGTGATGGTGGTTGATTGGTTTATAAGTATAAAGGGGATGATAAGCACAGGCACTTACATGCATGTCAGCTGAGAGCCTGAGAGTTGGAGCCATGAGTCAATTACATGAGATAAACTAACACTATCTGATGCCTTGATCAGTTGTAGTGGCTTCAGATGTTCAGAAACCACCAGTTCACTTGTATTGTGGACTTTTGTGGTAGACATAATTGCCTTGGCTTAAGATAATGACTGAATAGTAGTCATTTGCAAATTGTAATCTGTTCAGAACCTCAGAACCTGGCACCGCAGACAAGCAAGCATATTGTCAGTCATATCTACAAGACTGCAGAGTACAGAGTCTTACTACAGACATGGCGAACAAATCAGCAGCATTTGATCACTTTGTTTTTCGTACAAGGCAACTACAAAGCCCAGTGTAAACACTGCGACATGAAGATTTCCTCCAGCTCTGGGGTAATAACAAACTTGTTGAAACACATGAAGGTAAGGTTATATAAAAGTTATAGCAAATATGCACTATTATATATGTATGTTTGTACTACACCAATATGCTACTTATTAAGAATATGGTCGATCATCGCCGAGAAATGTTCTGAAGTACTTGTAGGCGTTGTAGTTTAACGGTATTATAGGGCTGGTATTACACAATAATGTCACAGGAAAAAAAATTCACAGAAAAAAGTCACAGGGAAGAAAAAGACACTTTAAATATCAATAAATATCAAACAATATATAATCCTCGTACAAACAACATATGTAAAGGATGGAACAACAAATTCGACAAATTCTATATATATGTATGTATAATATACATACATTGTATATATATATATATTATATATATATATATAATATACTTACATTGTATATATATTATGTATATATATATTTTACATAATATAATAATTATATATATACATAATGTTATAAAATATATAAATGAAATTTTGAATTTTACAAAGGGCAAATCCTACTAACCACATGTAACTAAATATATGTACAGCTGACCTATTTAATTAGGGAAATGTGGGCTGAACGGTAGGCTTGAGTAAATAAGGGTTCTTGAATAGGGAATTAGCAGGCAGGTGTCCTTAATTGGCATTATATGTAAATAAATGTGTCCACTGAGAAAGGCAATGAGATGAGGTCTGACTGATCTGAATTTGGACTTAATGTTTGTTGGCAGAAACTTAGCACTTGGCAGAAGAAAAAGCATAGTGAGTTTAGTTGCAGTTATTTCAGTGACATTTGTAATGTGGTTAAAGTCAGGCCTGGGGTCAATCACTTCGCAATGTAATATATTACTGTTACTTAGTTTCCTTCCTATCACTGTTACTACTACATACTGAATGGAACATACTGCATATTTTTTATTTAATATTTCAGTACTATATAGGATTGAAAGACAAAAGCCGTCTTACTGCCACTTAATTGGGTTGAGTATAATCAATGTAATTAAACCATAATACGCTACTGCTGTTTGGTGGATAGTTAATTATTAGCTCAATACAAATACATCAGGATGTTTTTCACGCCTATGTTGTTTATCCCTAGTAGATTGCAGGCAGCCACTAAATTCATAGGCATGTGTGAAAAGGGTAGTTGGCCAGAGAACCAAGTTCAACCAACTTCAAAGAACTATTGAAGTCATGCATCTGTCACACTGTCCCAGTGTCTCCTGCTATGTAAACTCTAACAACCTCCAGAGTGAAACACACAGAGGGTCATGATTCACAGCTGGGGGGGGGGCAATCTTAAAACAACTGCTTAGATATCTTGTTTTATAGTTTTATTGTCATAATATATTTAATTCAGATAGAAATATGAATTTTTTACTAGCTACATATTTGTTGTGCATTGATAAATTTGAAAATTTCACACTTTAATTTCAATATTAATTTCTAATTTCAGATAAAGCATGCTGATGTTACGTTGACAAAACCCAAGGCATCAGATTCACAGCCAAACAAGACCAGTTTCTTCTCCACACCGAAGAAATTTGCAACGACTGATCCACGCCAACGTCAAACAACACACGACCTGGTATCTTTTATTACTGGCGATCTCATGCCCTTTTCTCTAGTAGAAAGTGTGCACTTCAAGAATCTGATCTCAAAACTCGAGCCACGCTTCCAGATGCCCAGCAGGAAGCATTTGTCTACTATTCTTCTCTATGATGCCTACAAGAGTGTCTACAGTAACCTCAAAAGCCGCCTGGATGCTGCTGAGAGTGTGTGCGTCACAATTGATCTGTGGTCAAGTCGCCAAATGCGCAGCTTTATCGGTATAACCGGACACTGCATCACTGATTGGAGCATGGATTCTTTCATGTTGGCTATGACAGATTCACCGGGCGTCACACCGGAGAACACATCATGCAGCAGTACTCCGAGGTTATGGAATCCTTCGGCATCATATCGAAGATCTGTGCAATCGTTACAGATAATGCATCGAACATGAAGCGCGCATTTTCTCTTCCTGGATTCAACGCTAGTGCTCCCGATAGTGATGGAGATAGCGACACCGACGATGAGTCTGACCCCTTAGTTTTCTGGAAGCTGCACAGGGAAGAGTTTCCCACACTGGCACGACTTGTACCAACCCATCTAACGGTCCAGGCTAGCTCTGCACCAGTTGAGCGACTATTTAGTGTCACGGACAAAGTCTTTCGCCCAGACAGATGTAGGCTAACTGATGAAAAGTTTGAACGGATCATGTTTGTGCGGTGCAACAGGAAATGA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-BED

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02892	zf-BED	BED zinc finger	Domain	Interproscan
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003656	Domain	Zinc finger, BED-type	Interproscan
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR052717	Family	Vacuolar processing and transposase activity regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46169	DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf8420_3.3 global RNA-seq network