Gene detail

Detailed information of PE_Scaf8333_2.20 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf8333_2.20	RIBOSOMAL RNA METHYLTRANSFERASE	Superscaffold5	19189780	19192708	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf8333_2.20

TTTGAAGTAAAAGTGCTTAACCATCTTTCTTAAAATATATCCAATTTCCTGGCCTAATTTTCATTAAAAATTGCAGCAGGTGGTTACTAAAGAATGGTGCAGATTATACATAAATATTAAATAGTAACGTAGTTTTTTTTTTCTTCAAAAATACGGAAGCAAAACGTAAATAAGTGGCTGCGGGGTTAAGGACGGTGAACGGGATTCCCTAATCTGTCAAGATGTCGAGGAGTTTTTGGTCATGCTGTTCGCAGCAATATCCATCTAAAATATCGCATTTATGCGGCGTGTCAACGGTGCACCATACCAATATACATACATCTCACTACGTGTTAAAAGAATCACCGCATAATGTAAAAGGCAAAAATGTGACGGCGCAAAAATGGTTGAGGCGTCAGCTGAGTGATCCGTACGTAAAGAAAGCAAGGGAGGAAAGTTATCGGTGTCGCAGTGCGTTCAAACTGATCGAAATCGACGACAAATTTCACATCTTGAAACCAGGACAAGTTGTGTTGGACTGCGGGGCAGCCCCCGGATCCTGGTCGCAGGTCGCTGTACGCAGAGTTAATGCATTGGGAGATGGTGTGTGCATTTTAAAATTATGTAGTAACTAATAAAATGTAAAATAATAATTTAATAATATTAAATCATTCAAAATGATGTCCAGATGCCACTTGGTTTCCAGATTATTATCATAATTAGTGTCTGGATTAACAACATAAGTTGTTGTTCCACTGTGGTTGGATTTTACATAAATCTGTGACTGTCTCGATCAGCTGTGTGCAAATTTATATAAATGTTTTATTTACACTATTGTGTTTGTACAGATTCAGAAGCACTGATGGGCCGAGTGATTGGCGTTGACCTGCAGCATATGAACACGGTCCCTGGAGCTGTCATATTGAAAGAGTGCGACATCACAGCAGATTCAACGCAGCAGAAAATCTCCAATATTCTTGGAAAAACAAAAGTAAATGTTTTCCTCAGTGATATGGCACCAAATGCCACTGGAATCAAATCGATGGACCACGAAATCATCATGCAATTGTGCTATGTGGCATTGACGTTTGCCGTAGGTGTCATGGCAAGACAGGCAACATTTGTGTGCAAAGTTTGGCAGGGGTCAGAACAGCGGCGGTTTGAAGCCATCTTGGAGCAGTATTTTGAGCAGGTGAAGGTCATAAAGCCCAAAGCTTCCCGGTTGGATTCAGCCGAAATATTTCTCATTGCCAAAATGTTTACTCCACTGATCCAAACAAAATGACAAACCTGTTATTGCACATGTGAACATATCTCAGAGGATCAAGAACATACTGTGCAAACGTTTCTCACCGTGCCACACAATCACTTGTTTACCATAAATCTAAGGATGTTTCTATGAGCTTTATGGTACACATGGTGTACATCTAAAGGTAGTTTTTAAGTAAAATGTGGCATGATGTCATTTCATTTTGTGCCTTTGAATCCAATGTCGAACAATTTGGATAACATATCACAAATTGTATTTTGTAAGCCTCAGAAATAATATAATCAACGAGAATTCATGAGCATTTATTGCTCATGCAGTTGTAATTAAATTGCATTATAAGTTTGTAGTGGCTAGAGCTTCACTCTCAATCGATAGAACTCGGGTTCAAATCCTGAGCTGCTGTGTCGAACCTTGGGCAAGTTTGTTAATTCTATGTTACGCCAGTTGACTCGGCTGTATGAATAAGTACCTGGCTATAGACATTGGTGGATATTTGTGTAAGAAGTCTTCACGCATTAATTGCAGCATTGCTGAACGCTTCCCAGAGAAGTCAAAATGGTGTTTGCTTGTACAGGTCTGCCAGGGAGTAAAGCGTTTTGAGCAGTCCTGAGGACTGGATACTGCGCTATATAACTGACCAGTTTTGACACAATTGTTTTACTTGTTGATTTGAAAGAACATTTATTGGCATTGGACTTGACCGTTTTATGTGCATATCATGTTGTCCGGTGAAATATACTTACTGATGTGATAGAGTTTGGTTGTATGTTATGATATAGTTGTTAGGACAAATTCTTGGCAGCCAATATCACATATGTGATGTCATATATTTCAACTACTGTGTACTCTCATGAGTATACATACATCAACATTTATTGGAATGTGAAGTACAAAATATTGATAAGATTTTGACCAAACTCTACACTTATGTATTGGAATGTATCTATAAATACTACGAGTCTATGAGTAATGTTCTTCAATGGTCCTCACAGTTTTATACCATGTGATAATCTATATCATGTCACATTATTTGTAACTGTGGGCATAACTGTTATACAGTAATAAAACAGTTTTGTTATAATATATATCGTATGTACATGGCAGTGGACTAAGAATGTTGTATGCAACATTCTGTTTTGTTGTCAGTATATGGCAGACACTGTCACAGAGATACCATCACACTATGTGACACTGTTCACGTGAGTTCCGTTTGGTGATACAGTTATGGTGACACTTGGTGACTCCAGTTGAAAGACCTTCGGAAGATATGGTTTGATCTGAAACAAGACCACAATTATGTTATTCCATGACATAATATACAGTACATGCAATTTATTTTTGCACTGCTAAGATGTTCCAAATGTATTACATCAATTTTATTGGTGAAGAAGTCCAAAAATTATTTAACAGTTTACATTCATACCAACTATGTTATGCGCACCCACGCATGCACACACACACAAAGTTGTCTTTTTCAAAATGGAAACTTTAACTGTGTAAATGTTGTTATGTTTGGAATTATGACAATCACTCTGCAAACCTTCACCTGTGGATCTGACTCCTCAAACCCCAAGAGTCTGTACTGTATATGAGAAACCCACATGACATGATAGGTATGTGTGTTCCACACGTATACACGTATACACGTATACCTACCTGTTGTGGGTTCTCGAGATCCTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01728	FtsJ	FtsJ-like methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002877	Domain	Ribosomal RNA methyltransferase, FtsJ domain	Interproscan
IPR015507	Family	Ribosomal RNA large subunit methyltransferase E	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR050082	Family	Ribosomal RNA large subunit methyltransferase RlmE	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10920	RIBOSOMAL RNA METHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001510	Biological Process	RNA methylation	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0008650	Molecular Function	rRNA (uridine-2'-O-)-methyltransferase activity	Interproscan
GO:0032259	Biological Process	methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf8333_2.20 global RNA-seq network