Gene detail

Detailed information of PE_Scaf8308_1.7 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf8308_1.7	ZGC:194242	Superscaffold10	27186782	27193539	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf8308_1.7

GGCAGCAGATGTCCATGGCGCACGTGGGAGATCAATGCATTTTACATCTCGCTTGAAAACATATTTGAAGCGAATGTGTTGTCTGTTGTTTTAGCAGAACTGTCTTCGTTTTACATGTCTTCATACCAGAGCATGTCTACAGTATTGTTCTGAGCCGTCGTATATGGACACTGTTCCGTTTTCACGCCTGCACAAGCCGCCTGTGTCACGTGTGTCTCTCGCTTATAGGATATGGAGAGGCCGAGGATTACATCGCTGCTGAAGCCTGTGAACGAAACGAAGAAGGTGTCGAAGGTGAGTTTATCGGATACAGGAGTAAGACTCTGTAGTTCGCTTGATAGTTCACCAATTTGTTGTCAGGATGTTTATCTTGTAAATATATACATAACGCTGTATTACCGAATAGTTATATATTTGATGCGCAACTTTTCACGGTATAAGGAACCGCGATTGTGTATTTTTTTCAACTTAAAATTGATTGTTATGGATTATGTGTTTCGTGTGAGTGCGTGCGTGCGTATATGGGTGTGTGCGAGCACGCGTGCGTGTGTGTGAGCGTGCGTGCGTGTGTGTGAGCGTGCGTAAGTGAATGTGAGCGTGCGTATGTGTATGCGTGTGTGTGTGTGTGCGTGCGTGCGTGTGTGTGTGTGTATTCTAATAGCTTGGCATGTAATTCAACGTATTATTTTAGTTTTGGCTATTTTCCAGTAAAGAAGCATGATGTTCTTGTTTTTTCAACATTTTATAGTTTTATAATTTAATAGTAACATCACTATTGGAATTTTGTTTGTTGTTGCAAATAAACATTCGCTCGCTCATTCGTTCGTTTGTTCATTCATTATTTTGTTCATTCGTTCATTAATCCACTCATTCATTCGTCAACCCATCCATCCATCGATCCATTAATTCATCCACCCATCCGTCCAGCCATTAATTCATCCATCCACTCAGTCATTCATTCATCCGTCCATACATTAATTAATATTTTCATCCAGTCACGCATTTATTCGTTTGTTCTTTTATTCATCCATTCACTAATCCAACCATTCGTTTATTAATTCATCCATCCATTCGTTCACGCATTCACTCGTTCGTTCGTTCGTTCGTTCGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTCCATCCATCCATTCACCCATCCAACCATTCATCCACCCACCCATCCATCTACCCATCCATCCACCCATCCATCCATGTACCCATCCATCCATCCACCCATCCATCCATTCATTAATTCATTCATCCTCTGAAGGCTGCCGACGCCTACCTGGAGTTCTTCAACAACAATAACAAGGACGGTGCGGAGGGGATGCGGCAGGACAACAGCAGCGACCTGGCCAACCAGTACTATGACCTGGCCACGGACTTCTTCGAGTACGGCTGGGGCGAGTCGTTTCACTTCTCCACAATTCACAAAGGCGAGTCGTTCGAACACGCCATTGCCAAACACGAGTACCGCCTCGCGTTGAAACTACGGCTCGAACCGGGAGAGAAAGTGCTGGTTAGTGAATGTTAACATGATTTTATTATTATTAGTAATAATAATAACACTTCTGTAGCGCCTGTATATTCAGAAATCTGTGCTCAGAGGCGCAACATACAAGAATCGTAAAGCATCATTAAAAGTAAAAATGCAAAAGCCACCAACGTATCATCGAGGACACTATTTCCGTGACACACCGGCGAAAGCGTCCCGGTGGCCCGTCATGGTGTCGACAGTTTTCAGTAAACAAGATGACAGTTAATGAGAAAAAATGTATTTTAAAGAGCAAACTTGGACTTATGGGCTCATACGGATGTTAGTGAAACACTCCCCAGGGGATCTAATAATCTCATTGTCTCTGGGATTGTTTTGGTCGTTTTAATGTTTTTCACTGCTAAGGTATCTGGTTCTGGAATCACAGAGAGTCTCCCTTTCAGGACATGGGTTGCGGAGTCGGTGGTCCTGCGAGACACATAGCTCTCTTCTCGGACACGAAAATTACCGGACTCAACATCAACGATTACCAGATCCGCAGAGCGCGCGAACTCACGAAAGCGGCTGGTGTGGGGCACCTATGCACCTTCGTTAAGGTCAGAGAGCAGCGACGCAGTACCCGAATGAATGGAACGTCTTTTGTTGTTGTTGCTACGGGTCTTAATAATGATAAGATTATGACGAGTCCATCAGACGAAGTGAATTCATGTTCCCACATCAGTTAAAGTAGCCTCCAAGTTTAAAATAAAGACTTTTAACATTTGCTTAAATGTCGTACATCAACTTAATATGCTTGTGCATAAACGCGCTTGTAATTACTTACACAAGAATTGCGTTTTTGTATCAGATTGAACATGTGCGAGTTTGTCCGATTATTAGTGCTGTTATTCCACCGCCGAGTACGACTGCAGCGGAATGCAGGTCATAAAGGTGCCCTTTGATATATATTTCACAGTCCCAATCATTTTAACAAATTCACAGTTGTGAACTATGTTTACTGTCGTCATAGTAGATTGCCGTTCGGTTTTAAAACAAGTGAAATGTTTGTCTCCCGTTGTGTACGCGATGACGTAAGCAGTAGTTTCGTTGTCACCCCTCCCAATGAAGTGTTGTTATCAAATCACCAGTCGAGTTACCCAGCTTTGCCCGGGAGAACAGGCAGTCATACGTATGTAACCCTGCGAGATCCCCACCCACCGGATGAATTTGTTTAAAAAATGTAACCACGAACCACCCCAATGGGCTTGCTAGATCGCACACAAAATGACAGCCACATACGTGCAAAACTAACCGAGCTATGGATTCACAGACAGACAGAGAACCGTTTTACTTTATAATATGGATAACAGCACGCCCGTTTTGGACAGAGCATATTTCACCCGTGTAAACGTATTGATGGTATATAAAATGCACTCTATGAATAGTTATGATTTCGTTAAATGCTTTATTGTTATTGACACACAGGGCGACTTCTGCAAGGCGCCGCTAGAGTCGGAAACATTCGACAAAGCGTACGCCATCGAAGCTTCGTGTCACGCCGCCGACCTCTCGAAGGTGTATCGGGAGGCCTATAGGCTCCTCAAACCCGGCGGACTGTTCGCCTCGTACGAATGGGTCATGACAGACAAATACGACCCGACCAACCCGTATCACAAACAGCTGAAGGAGGAAATCATGGTGCGTAGCTTCCTCGGTCGTCGAGAGCTATAGAAAGGCCGATCGGTTCGGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTATGTGTTGCTCGTTCGTTCGTCCGTTTGAACACCAGAGCAAGACATACCAATTAGGAGATCAAATTCTTTTGCAAAGAAATTATATTCCTCACCGAAAGTCACGCAGTTTTAAACTTATAACTACAGGGATTACCCATCCTGGCGATCCAGGGGGCGCTGATTACACCAGTCTCAATAGTGCACTTAGTCACCATCTCTACCCTGCGAAAAAATATTTTGATATACGCAAATGCCGTCATTCAATGAATCATCGTTCGACATAACAGCATGTCTCTTCCATCTCCTCTATATTTCTGTCTTCCCCGCCCTCTCCTCCCTCCCTCGCTCCCTCCCCTTCCCCCAACGCTCTCTTCCTCTCCCCGTCTCCCTCCCTCGCACACCCACGCTTCCTCCCCCAACCCTCGTGCACTCACACTAACCATCTAAGAGTTCAAATTTGTTCGTCTTCAGTTGGGTGACGGTCTGCCAGACGTCAACAGCGTAGAGACTGTTCTTCACGCGGTCAAGTCGAACGGCTTCGAGCTGCTCGAGACGGCCGACCTGGCGGATCATTCCCCCATCCCCTGGTATTCAGTCATGCAACCCCGCTGGACAATCGCTGACTTCAAGATTACGCCCCTCGGCCGCTGGCTCACGCATGTGGCGCTAATGGGGATGGAGCTAGTGGGATTCGCTCCGTCGGGCTCAGTCAAAGTTCATCGGACCCTGTGCAAGGGAGCTGACTCTCTGGTGAACGGGGGCAAGGAAGGGGTGTTCTCGCCAATGTACCTCGTTGTCGCCCGAAAGCCTGGACTGTCGAAACAATAGCGGGTATACGATGGTTGAGTTGGACTCACGACGATGGTAGGATCGCTGGAGTGATCCCACGAGCATCAGCGGTGCTGCCGCTTCTATCAACGGCGCGGATACACGCCTGGTGTAGGTACACCGATAAAGACGCAACGACACGTCGGCGTTGCTACTTCGGTGTTACATCGCTCCGATGTCTGTTTCGGTAGCAAATGTTTTCACGGTTTTGTTGGTGGCGTCAAACATAGCACGTTTGTTGTAGATTCAGCACCCGAAAATTCGCGTTTCGGCGGAGGTACGCGTGGACAATTCTTCTTGTCACGGTTGCGACACCTGGTTGTCGGTGTCACCCACGTGACTATGAGAAAGAGCGTGATGATAAACGGCCAAGCGTTGTCACAATCGTCATGCATGGTTCTGTTTGCTTAGACGTTTCAGGACAAATGATTCGGTCAACAAAGCGTCGACTGTACGAATGTTAGTTGTCTCATGTGATATTGCATTTGTGTTCCGTGTAGTAATAGGACGTCTATGTATTATAAGTTTACTGCAGTCTGACTTCATTGTGCCTGTCAATTGTGTTAAGTATAACTATATTTAAAAGTGTGATGTGATACCGTTACGGTGTGCAACTAACAAGTTTGTGTAAAGTACTAAATATCACTCTCTTGTCTGATTTGGTACACAAACGTACGTATTGTACACAAACGTACGATGTATATACAAACGTTTGTATTGCAAACGCGTCTTGTGAACTACGGCTAGAGCCGTTTACATAGCAGCCTCTTATGTAGTGTACAGAGAGTATCGCCAGAAGAACGACGTGACGTCACAGAAAACAATACAGTCTTCTGTGATTTAGAAGGTACTAACATATAACTCAACCGACGTTGTATTATAATTAGTTTATTTTGCTCTGCCTGGGTGTTTCAATATATATTGTCTTCATTCGTATACTTTAAAACAGATACATTTAGTGTCATCGTATTTACGTTATTCACGTGTACGCGTGCTAGGCAATCAGAAAAGTAGTATATAGTCTGCATGTCAACAACACACGGATCATTTATTGGCATTGGAATGTCATCGGACTGGACGCAGTGCAACACACCATCCCCTCAAATACTGCTACAAGTCTATGATTTTCCTCATATTTACGTAAACTTGTAAGATGTAGTCTCGATTCTTGTGTTGTGTTAGCATAATTTTGTTGCTAACCATGCGCGCGTCCTGCATGCATATGTGTACGAAACGTTACTTCGAGTGGTCATTTTCTCAGTAGTGCGGACAGTGTGACGTCACAGTACGTTCTTAGTCCATGTACACTGCCTATCGCCCAGTATGGCTCCAAGCGTATGCGTGTTCAGTAGTTGATAGAATAAACGTAACTGGATCGTAATCTGCAATGTGATTTAGTTATTATGTATTTGAACGTGAATTGAAGGTGGTATCTACCGAAACAATCAAATACATCGACCTGTAAATGTCGTGTTTTGGCGGCCATTTGACGACTCGCTTCAGTGACGCCACTAGTTCTACATGTACGGGGTTTGTCGAAACCGCCCCCCCAATAGTCAAGTGGATCGCGCTACCGTGTGTCTCTGTTTCTATGTACGTGTGTCGCTAATGTTCTCACTAATCCTCTCGCTCTATGAAGTTTTATAGTGTATGTTTTTGTTCAGCGCACGTGATACTGATATCATATCGTCGAGTGTCATTTGTAACTTAGGAACTTAAGCAATCCAGTTGAGAAGGAATTCACGTAACGTAACAGTGAATAATCTTATACGTTTGTCGTTTACTTGACATTGCATGAAACCGAGGCAGGCATCTGACCATATTGTAACTAAACACAAATATAACCGGATATCGTAGAATTGTGAGACAGGCGTCATCGGTGCTATGCGGGGTATTTGCTCTAATCTGACTGACCACTGTATTGCATAGTTCTACACACGGTCGACAAGTCGTTCTGTCAAGTATTTGCATGTCTTATAAGCTCAATATGACGATCCCTAACTGTATTCCTGTACATAAGACTACCCCCTCGACCAATGGTTACACTAGACTAACTACAAACATACCCGTAGACATGTGCTTATGTTTGTTATTTCAAACATATGAAGACATCATTAACTGTTAGTTTAGGGATGTAACAATTCATCGATATATCGCGATACTTCTCTCACGATACGATACGCGATATCCTTTATAAGTGTCACGATACGTGCAAATATATTTTCCAAAGTGTTGGCATTGAAAGTTGCAGAAACAGACAAAAGCACGAGGATAATAATATTTATGGTGATCTTTTATTAATGGGGTATGTTTCTGGATCGGTGACTCAAAGAATAAGTTATCGAAGATCTTTCAGGTTTTAGTTATTACAAACATTGTGTTATCAGTTTTAAATAACAATTTTTTCGAAAATTATACATAGGTTGGCATCGCAACACGTATCGTATCGTGACACTAATATAGCGATATCTAGTATATCGTGACTTAGTGCCTACTTTTGATATGAACAGACACAAACTGTGGTCACAACAATAAAATAATTAAACCGTATATTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08241	Methyltransf_11	Methyltransferase domain	Domain	Interproscan
PF08498	Sterol_MT_C	Sterol methyltransferase C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013216	Domain	Methyltransferase type 11	Interproscan
IPR013705	Domain	Sterol methyltransferase C-terminal	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR030384	Domain	SAM-dependent methyltransferase SMT-type	Interproscan
IPR050447	Family	Erg6/SMT methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44068	ZGC:194242	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003838	Molecular Function	sterol 24-C-methyltransferase activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006694	Biological Process	steroid biosynthetic process	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0008757	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan
GO:0016126	Biological Process	sterol biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf8308_1.7 global RNA-seq network