Detailed information of PE_Scaf8273_0.7 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf8273_0.7BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1Superscaffold19416142894195804+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00533BRCTBRCA1 C Terminus (BRCT) domainFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001357DomainBRCT domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR031099FamilyBRCA1-associatedInterproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR13763BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000724Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006974Biological ProcessDNA damage responseInterproscan
GO:0031436Cellular ComponentBRCA1-BARD1 complexInterproscan
GO:0035066Biological Processobsolete positive regulation of histone acetylationInterproscan
GO:0035067Biological Processobsolete negative regulation of histone acetylationInterproscan
GO:0045717Biological Processnegative regulation of fatty acid biosynthetic processInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0070531Cellular ComponentBRCA1-A complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf8273_0.7 global RNA-seq network
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