Gene detail

Detailed information of PE_Scaf8106_3.10 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf8106_3.10	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	Superscaffold5	57805055	57808290	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf8106_3.10

GTTGCTATGTCGCTCATTTAAAGGGCGCGATACGGTGACCGCAGCAGTGCAGACTAACGCAAGCCGGGTCGCTATTTGGGCTTCGAAAGTGCGCTAAGACGCAATGTTTTCGTAATATAAATATGCCTGGGATGATGTTGCATGATGGAACTAACGCACTGAGGTATCAAAGTTAGGCAAAACTCGAGTTATGTAACAGCGGAATCAAGATGGGTCCAGATTTGACACAAGTGCCCAATCTTTTACTTAACTTGCCTAAAACGTCTAAATTATGCCTCTTAGCAACATCCACCTTCTTATACTGTCCTTGAGAATCAATGATTGAGATGAGGCATAATTATCAGGATGAACCTAATTTAGGTATTGATATATATACCAGAATTGTACTATTCTGGTTTACCCGCAGTGCGCAATTCTGGTATATGAGGACTGGCGAATGGTGCCATTTTCGTGTACGAGAGCAGTCAAAAATGTTTGTCTGTAGCCACAAGGAATGGCCTAAAATAATGATGAGTGCCAGGACGTCCAACATTGTTAGTAACTTCGCTGTAGACACTAAAATTGTAAAAACATTCTGCTGGCTGGACCTCGCTCATTTTGATGCACCACATTTACATGTAAATTTCAGCAATACTGCATCTGCTAAACCGTGGGAAGTCACATACACTGGCTCAAAAGTCATGTGCCATGTTGTGTGCACTTTATGCAAACAACTAAATTGTACATAATACCTCAAACAAATTTCTGATTATTAAATTACAGTTCTCTTTTCAATAGTCTCAGCATAGACATTGGGCGTCCTTTGTTTTTTGAAGTAATATTCAGGCTGCGAAATAAGGCCGGTCCGATCGTCCCGGACGAGTAGTTTCAGTGATCGGACTAGTCCATGTTTAGTTGAGCAGTCCCATCGGACTAGCTGTTATTATGTAAATTAATTTACGCTATGTATACGCTAGTTGGGTGTTGTGATGGAATAAAACAAAATCAGACAGTAAGGTAGCATTTTATCACAGGCAGCTAAATATTCCGTACGACCGTCAGATCGGAAACTTGCTGAACGCAGTGAATGTAAATGGCGGCTGTTTACATCCGGTTAGAGTAGGATAGGTAGTGCCACCTAGCGACCATGAGTGATGGACAAACATACATGCGCGGGTTACTGACATCGTTACGTGCTATCCCGTCGTGATGGTAGTTGCGTTATTCCTGCATTGGGTGATTATTTTAGCAAGTTACCAAACGCCAGCAATGTTACTGATTGTTTAGTCAGCTTCGGGAAAGAAAACGCTAATGAAAAGTATAGGGCAAATGATGCAACTTAGTCCGACAATGTCGGTCCTTTGTCGCCGTCAGGCTTCAAATTCTGCTGGAATCGCCTTGTCCACGACTCCTGTTTGCTGCCCCTGATTAAACTAGTCATTTCTTCTGATAACTTTGCAATTGGATCTACGAAATCACATGTATTTGTTTCTATTAATGACACATTTAGTTGAACATTTAATTGAAATGGGAAACGGCTTGTTTTCTTTATGAAATAAAGCCACTTTTACTATGTGCTATAACTGTCACACATATATGATACCACAGTATGATTGATTTTTAAGGACTAGTAAAACAATATGAGGACTAGTTGTTTCTGAGTCAGCTAGTCCGACGGACTACCTGTCAATTAAATCCACCGTGCACCCTGAATATTTAATGCCAACCATGACTTGTATTAGTTGCAGAAATGGCACCACGAAAAGGCAAGACTCAGAAGGAAGAACAGGTGGTCCTCGGACCTAATGTCATGGAGGGTGAGAATGTGTTTGGCGTTGCCCACATCTTCGCCAGCTTCAATGATACATTCGTGCACGTCACAGATCTGTCGGGCAAGTAAGTACAGTATGATAACAAAAGTAATATTAAATTAGTCATACTGAGGCTTTGAATTGTGCAGTAGTTTGTCATTAGTCTCATCTAGCTTGCAGGCATGATATCATTATGATTGAACAAATATATATCCTCTCTGTGAGTCGGTCATGTATATTAACTTAGTTTTAGCATATGGTTATATAATCAGAGCAGATAAATGTAGCTTCTGAATTTGTTCAAACTCCCAGAACAACATAATAGTTAGGGCTTGATATGAAGCATACAGCTTGTTTGTTTTAGGTTTAGAATATGCATTGAGTCATTCTTAGTATTCTTCTGTCTTGCAAGGTTTGACAATTATGACCCTCTAAACCATGTTGCCAGATTATCCAGTATTTTTATTCGTTTTCCCTCAATCTTTCTTGTCATTAGATTTTTTACATTTTGCTCAGTCATGATCTTTCTGTTAGTTTGCAGTTCTAATGGTGTCTTCATTACTTTTATGAAACTGCACTGAATGTCTGTTGTCTTGTGCAGGGAAACCATTGTGCGTGTGACGGGAGGCATGAAGGTGAAGGCCGACCGTGACGAAGCCTCTCCATATGCCGCCATGTTGGCTGCCCAGGATGTTGCAGAACGCTGCAAAGCACTGAAGATCAGCGCCCTGCACATCAAGCTGCGTGCTACCGGTGGAAACAGGTCGGTCTTAGTGAAGCTAGAGTGGTTTATTCCATTCTCATCTACCATGGGTGATGAACTTTGTTCCAGCTGCTTCATTAACCAATCTGATGCAATGTTAAAAGATTCTTGGTTACATCCGGGGGAATTAACTACCACATAATGGAACATTATGTCACAGAACATAAAAATCAGATGGGTCATCTCATAGTTTAGGGAAAATTATCATTTAATTCAACTTGGTTTTGTTAGAAGCTGCACTGATTAGTAATATATATGTTGTATGGGGTATCCAGAAGGGGTTCATGCAGATACAAATACTGCCCATATGAGAATGCATTAGTGATGACTCTAAAAACATTTTTAAACATGGCAAACTTGAAAAACGTTTATCATAAAACTTAGTTTTAGCATTTTTTATTTTGGAAGCAGCCAGTTTCTTGCAGCAGTGTCAATAATTGTTTACCCTTTTTGTTTCTTTTATTCTCCATTGTATATAGCATATATTAGGAATACAGCTGCGTGTCTGACTGGACAGTGATGTGGTCCTCATCGTCTGTTGCTCATCAATACTATTATTACTTGAAGATCATCCAAAGTTGTATTTTTGCATACATTTACAGGACAAAGACCCCCGGACCAGGGGCTCAGTCAGCACTCCGAGCGCTTGCCCGCGCTGGCATGAAGATCGGCCGTATTGGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00411	Ribosomal_S11	Ribosomal protein S11	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001971	Family	Small ribosomal subunit protein uS11	Interproscan
IPR036967	Homologous_superfamily	Small ribosomal subunit protein uS11 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000028	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf8106_3.10 global RNA-seq network