Detailed information of PE_Scaf7685_15.5 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf7685_15.5DNA2/NAM7 HELICASE FAMILYSuperscaffold11339445313446850-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05383LaLa domainDomainInterproscan
PF13086AAA_11AAA domainDomainInterproscan
PF13087AAA_12AAA domainDomainInterproscan
PF14444S1-likeS1-likeDomainInterproscan
PF21634MOV-10_beta-barrelHelicase MOV-10, beta-barrel domainDomainInterproscan
PF21635Mov-10_helicalHelicase MOV-10, helical domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR002344FamilyLupus La proteinInterproscan
IPR006630DomainLa-type HTH domainInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR025223DomainS1-like RNA binding domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR041677DomainDNA2/NAM7 helicase, helicase domainInterproscan
IPR041679DomainDNA2/NAM7 helicase-like, C-terminalInterproscan
IPR045055FamilyDNA2/NAM7-like helicaseInterproscan
IPR047187DomainUpf1-like, C-terminal helicase domainInterproscan
IPR049079DomainHelicase MOV-10, helical domainInterproscan
IPR049080DomainHelicase MOV-10-like, beta-barrel domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10887DNA2/NAM7 HELICASE FAMILYInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0035194Biological Processregulatory ncRNA-mediated post-transcriptional gene silencingInterproscan
GO:0043186Cellular ComponentP granuleInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf7685_15.5 global RNA-seq network
TOP