Gene detail

Detailed information of PE_Scaf7602_0.3 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf7602_0.3	PROLYL-TRNA SYNTHETASE	Superscaffold8	10015576	10024141	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf7602_0.3

CTTATATTTTCGCAAGTTTGCTGCACCAAATTCAAATCAATTCACCACCGGAAGTCCCCCAAATACGAGATTACATGATTTGTCTTAATTTGTAGTCGACACAGCAGTCGTGCCAGTCCCTGCATCCTATTCTACATTCCGGATGGACACACGAAGGAAATGCCCTCATCCGGCTCCAAACACAAAGACGTGGGCAGTGCCAAGGAAGTAAGTATGAAATCTCTGAATCCTGGAATTTCAAAGAAACATCCCTCCCAGACTCCCTATAAGATTTACTAATCTGTTACACTTAAGTACCTAATTTTTTTAACACTATTCAAAATGTTACAAGAAAAAGTAAAAAGGTAAATTGACTGTGACATATATAAAAAGATAACCAAACATTGACATTTTATTCATATGTCATAAGTGTAAAGGTAAAATGCTGATCTGTCCCATGAGCCTGGAGGTAAAACGCTGATCTGACCCAATGACGAGGTAAGATACAGATCTGACCCAATGATATGAGGTAAAATACTGATCTGACCCTAAGACGAGAGGTAAAATGCTGATCTGACCCAATGACAAGAGGTAAAATACTGATCTGACCCAATGACAAGAGGTAAAATATTGATCTGACCCAATGACAAGAAATAAAATACTGATCTGACCCAATGACGAGGTAAGGTACAGATCTGACCCAATGACATGAGGTAAAATACTGATCTGACCCAATGGCAAGAGGTAAAATACTGATCTGACCCAATGAGAAGAGGTAAAATACTGATCTGACCCAATGACAAGAGGCAAAATACTGATATGACCCAATGACAAGAGGTAAAATACTCATCTGACCCAATGGCAAGAGGTAAAATGCTGATTTGAACCAATGACAAGAGGTAAAATACTGATCTGACCCAATGACAAGAGGTAAAATATTGATCTGACCCAATGACAAGAGGTAAAATACTGATCTGACCCAATGACAAGAGATAAAATACTGATCTGACCCAATGACAAGAGATAAAATACTGATCTGACCCAATGACGAGGTAAAATATTGATCTGACCCAATGACAAGAGGTAAAATACTGATCTGACCCAATGACAAGAGATAAAATACTGATCTGACCCAATGACAAGAGATAAAATATTGATCTGACCCAATGACAAGAGGTAAAATACTGATATGACCCAATGACAAGAGGTAAAATACTCATCTGACCCAATGGCAAGAGGTAAAATGCTGATCTGAACCAATGACAAGAGGTAAAATACTGATCTGACCCAATGACAAGAGGCAAAATACTGATATGACCCAATGACAAGAGGTAAAATACTCATCTGACCCAATGGCAAGAGATAAAATACTGATCTGACCCAATGACATGAGGTAAAATGCTGATCTGAACCAATGACAAGAGGTAAAATACTGATCTGACCCAATGACAAGAGGTAAAATATTGATCTGACCCAATGACAAGAGGTAAAATACTGATCTGACCCAATGACAAGAGATAAAATACTGATCTGACCCAATGACAAGAGATAAAATATTGATCTGACCCAATGACAAGAGATAAAATACTGATCTGACCCAATGACGAGGTAAAATATTGATCTGACCCAATGACAAGAGGTAAAATACTGATCTGACCCAATGACAAGAGGTAAAATACTCATCTGACCCAATGGCAAGAGATAAAATACTGATCTGAACCAATGACAAGAGGTAAAATATTGATCTGACCCAATGACAAGAGGTAAAATGCTGATCTGAACCAATGACAAGAGGTAAAATACTGATCTTACCCAATGATAAGAGGTAAAATACTGATCTGACCCAATGACGAGGTAAAATACTGATCTGACCCAATGACAAGAGATAAAATACTGATCTGACCCAATGACAAGAGATAAAATATTGATCTGAACCAATGACAAGAGGTAAAATACTGATCTTACCCAATGACAAGAGGTAAAATACAGATCTTACCCAATGGCAAGAGGTAAAATACTGATCTGTTGTCCCTGAGCACAGAGATAACATGCTGATATGTCCTCAGTGACTAGTAAGACAAGAATGCTATGCGTGTTTTGCAGCGAGCCCAGTCTGCCAAGGGGAAGGCTGCAGAGAAGTCTCCACAGGAAGAACTGCCCCCGGCTGCTGTTGTGTCCAGCTGTGATGCGGCCCCCATTGACCAACAGATCACTGACCAGGGCAACAAGATACGACAGCTGAAGAGGGAGAATGCAACCAAGGTACTGTCCTAAGTTGTTCTCTCCTCCCGCTGATGATGAATGGGATGTGGTAGCACAGTGGTTAGAGCATCAGACTCAGTTGAGAGATTCCGTGTTCAAATCCTCTTGATGGTGTTTTTCGAACCTTGCGAAAGTTCTTTCATTCCATGTTGATCCAGTCCACTCAGCTGTATGAATGAGTACCTGGCTGTAGACAGTGGTGGATATTAGAGTATTAATAGTCTTTGTGCAGTAATTGCAGTATGGCTGAATGCTTCCTGGAGAAGTCAAGATGGTGTACGATTGAACAGGTCTGCCAGGGAGTGAAGTGGAAAGCATTCTGAGACATCTGCACTATATAAGAACATACCTTTACTTTTATATTAATAAGCTTTTCTAGGCTCTCTTTTTTGCCAACATAATGTGTTCAAAGTAGGACAACTCTTGTCTTAGAATACTCATGTTCAGATCAGTTCTTTAGAGAAAGATATCTGGTGACCCGCATATCTCCGTATATGTGTGAGTGATAAGCACGTGCACGTTACAAACTTTGTTTGTTTCGCTGATACTTTTTCAATCTTTCTGACCATCAATTTGTTGTATACACTGTATGTAAGTATTACTGTGTCTGCTTTACAGGATGTGATTGCGCAGGAGGTGAAGACGTTACTCTCCCTCAAGGAGCAGTATCAAACTGTCATGGGCAAGGCATGGAAGCCATCCGATACCAAACCTAGCACACAGTCCAAGGCAGCCAAGGGTGCAGCTGACACCAGTGGCGCCCCTAGTGGCAGTGATAGTAAGCAAGTAGAGGAACTACTGGGAAAGATCGAAGCTCAGGGTGGCAAAGTGAGACAGTTGAAGGGATCTGGTGCGTCAAAGGTATGGAATCTAATCTGTCTTGTGGCTCAGTGTTTCTTTATAAGCAACTAATGTCGATTTGTAACTTGTGAATATGGCAAGCAAGAAGAGGAAGTAAGTAATAATGGTAATTATTTTTTCTGTAACTAATACATTTTTCTCAAAGTGATTGTAGTGTATAGATTCTGAAGTAATTCTTTCTGTTTCTTTTAGTTACGTATTTTAAATATTAAAATGTTTTCTTATTAAAATAAAAAACAAGTCTACACTGGACCATCATATATTATACTGGACAGAACAAAAACATGTCCTAAGGACTGGTTTTTATTGTTTTATAAACTTCTTTTGTACATGTTTATACTATTTTATACGCGTTTATAATAAAAAAGCACATTCACAACTAAACAACCTTTTCAGGATGAAGTTACAGCTCAGGTGAAAATCCTGCTAGATTTAAAAGCGCAGTACCAAAAAGCAGCTGGAAAGGCATGGCAGCCAGGCGCTAAGGCGGAAACAAAGGAAGCTAAGAATGCAGCTGACACCAGTAGCACCTCTAGTGGTAGTGATAGTAAGCAGGTAGAGGAGCTACTGGGAAAGATCGAAGCTCAGGGTGGCAAAGTGAGGCAGTTGAAGGGCTCTGGCACCTCTAAGGTACAACTACTTCGTCACGTCTATGTCTTGGTTCTATTTTGTTTCTATAAGTGACTAATGTATTTTTAGTAGGTTTCAACCGTTGGGTAATAATAGGTATTTGTTGTTAAACATTAATATTAATACATTTTTGTCAAAGTAATAGACATATCCATCACGTGACCTGTTGCCTAGCAAATGGTCCGTGAAGCCATCAAAAACTAGATGCCGAGCATTTGTACATTCCGTCATTTGTTGAAATTCCGACCCCAAACAAAAACATAAGAAATGTTTGATTTATGAGATGCCATGCAGCAGTAGTAATGTAATTCACATAAAATAACCATTATCAACATTGTGGACAAAGGCAAAGCTTAACAGAGGTCACATGTATAAGTTGCATTGTGACGTAGGCAAACTGTGATGTATTGGACCCATCAGTTGTAATAGATCCTGAAGTTATTGATGTTATTCTGTTATTCTGTTACTACAGCAAAAAAGGATATTGTTTATCCGCATCAGAAATTTATTTAAAAAAAATTCCTGAAACAGACAAACTTGCATTCTATTTACAGGCCCACATAATAATAATACTTGTAATAATTCTCTAATCAAAATATAAACGTTACCTTACTTATCATCTTCAGTGTCCTTCCCCAGTCTGTCTTGTTCCTGGCCACTCATTTGGGTTCAGTCCATGTTTTTCCATCTCGGGTGTTTTCCCACTTTTTCGGCTGTTCCTCACTTTGTTGTCTACGGGTGACAAATGCACTTTCTGTTTTGCTTCTGTTCTCCTTGACATCAGACAGTGGCTGTCTTCTTTCTGTCAATGTATATTTTCAGTTCAGTTCCACTGTCTTTGCTTGTCTTTGCTTGATTTTGTTTTCTTTGTTTTAATCAGGCCATCTTTAATAACATAACATATGCTTATAAGTTTCAGATACATTTGACAGAACCAACAAATTCAACACCCTGTTCTACTTTTTCAGGATGAAGTTACGGCTCAGGTGAAAATCCTGCTAGATTTAAAAGCGCAGTACCAAAAAGCAGCTGGAAAGGCATGGCAGCCAGGCGCTAAGGCGGAAACAAAGGCAGCTAAGAGCGAAACCAACACCAGTAGCACCCCTAGTGGCAGTAATAGTAAGCAGGTAGAGGAGCTACTGGGAAGGATCGAAGCTCAGGGTGGCAAAGTGAGACAGTTGAAGGGGTCTGGTGCCTCTAAGGTACGGAAGCTTCTCTTCATGGTTGTGTGTTTTGTTTATAAACATGTCAAGTATTTTTAGTAGAAGTAAGCAATGAACATGGAGTAACAGTAATAGTGACAGTAATGTAATTGTTACTTTTTTCTGTAATAGTAATGTTGACGTCTTTAGTATTGTACATACCACTGTTTATATTACCTAATGTTTTCTTTGATGCGCCATTGATGTCAGGTTTCCAAGAATAAATACATTGAGTTGCGATAGAATGTTTTTCTTTGATGCACCATTGATGTCAGGTTTGCAAGAATAAATACATTGAGTTGCGATAGAATGTTTTTCTTTGATGCACCATTGATGTCAGGTTTCCAAGGATAAATACATTGAGTTGCGATAGTATGTTTTTTTTTGATGCGCCGTTGATGTTAGGTTTCCAAGGATAAATACATTGAGTTGCGATAGAATGTTTTTTACTATTTTTTTCAAATAAATATTATGGAACTTAAAGTTATCGAAAGTATTCTGTTAGTTTTTATTGACATATTTTACAGCTTGGTTGCTTCAGGATGGCACAGTAAGATTCAAAAACTTGTTTATATAAAAAAACTTCTGACAACTACCAGATATAGTGGATAAAGCACTTGGCATAAACCATGGTCTTTTTTATTTACTTTACTATGTACTATAGTGCATGTTTTACAATTTAACAAGGCATCTTTACAATATAAAAAAATCCTTTTCAGGATGAAGTTACAGCTCAGGTGAAAATCCTGCTAGATTTAAAAGCGCAGTACCAAAAGGCAGCTGGCAAAGCATGGCAGCCAGGCGCGAAGGCTGAAACGAAAGCAGCTCCTGCAACCACTGCTAGCGCCCCTAATGTAAGCAGTAGTAACCAGACTGAGGAGCTACTGGCCAAGATTGACGCACAGGGAAATAAAGTGAGACAACTGAAGGGCTCCGGTGCATCAAAGGTAAGTGTCCATTTATTGTTGTTATAACTTAGTTTTCCAGCACTAAAGGGTGTGGATAGAGCATCAGACTCTCAACCGAGAGAACCCGGGTTCGAATCCAGTACTGCCGGGTCAAACCTTAGGCATGTTTGTTCACTCAAAGTTCCTCCAGTTTACTTAGCTGTATGAATGAGTACCTGGCTATAGACAGTGGTAGATATTTGTGTACGAATAGTCTTTGTGCATTAACTGTAGCGTGGCTGAATGCATCCCAGAGAAGTCAAGATGGTATTCAATTGAACAGGTCTCACAGGGTGTAGTGCTTTAGGCAGTCTTAAGGACTAGATGCCGCGCTATATTCTCCACCTTGTTATGTCTGTCTCCAGGAGGATGTGGATGCTGAAGTGAAGCAGTTGCTGGCTCTCAAGGCCAGCTACAAGGAGTTGACGGGAGACGATCTGGCCGCAGGAGGCAAAGGCAAGAAAGGCAAGAAGCAGGAATCTGGCGGCGGAATCAAGCCCAAGACTGAGAAGGCAAAGCCCCAGCAGAGTCAGAAGAAGGCTGCTCCGGAGCAACAGGCTGGAGCAGCAGGAACAGCCGGAGAAAGAAAGAAGGTCACCAGGTACACAGACATGTTTAGTAAATTACTACAGTTTAACACAATCTCTGACCAGTGGTTTTTATATCAAAATTAGTGTTCCGTTTTATTATTTTCAAATGTAAATTAATTATTTCTGATGTTGAATGAGTAGATCAAAGTTAAGAGTGTTCAGATTCAGATGATTAACTTTCAGGTTTCAAAGGACCAGTGTTTGAAAATCAATGAACCACATTGATGTTGAGCTAAATAAATGATTGAGGAAGGTGAGTTAAATGAAACTGTCTGAACCTGTCAAGAGGGGTTTATGGGTAGCCACTACCCGAAAATGGCCATATGCCATATCTGTTAGTATTGAACGTATCATAGCCAAATTTGGAGTAGTAATTAGTTAAATGAATAGTACGTGATATGTGGAATGTGGGCTCATTTGCTTGTGCAGTGCCATGACAATCAACATTTCTAGTGTGATAGAGGGGCATGCATCCTTGAAAATTATTCTGAGCTAACAACTGTATGTGTGATCATGCAGTTGTCAAGAATCATTAGCTAGAATACTCCTTTGTGCAATAATGTTGTTTTGGGCAAGGAAGTTTGACTGCAATGACTGTTGTGAGATGGGACTTTAGGTTTGAGCTTTTTTCAAGGCGTCTTGAAAAATGCTCAAACCTGAATAACAGTCACTGAAGTCAGATATCCTAGCCCAAAACCACCTTATCTGACAGAGGAACATTCTAGCTAATAATTCTTGACGGTTGCATGATCACACATACAGTTGTTAGCTCAAAATAATTTTCAAGGATGTGAAAATCCGTTTCATTTGAAGTGTTCATTGCTGTGGTAATACACAAGCAAATGAGCCCATCTTTCACATACCAAATACCATTCATTCTTCTAATCAGTGCTCAAAATTTGGTTGTGATATGTTCAGTATTAACATAGATATGGCATATTGGTTATATGGGCGTTTTCGGGTAGTGGCTACCCTTAAGTAAAGAACGAGTTGCTGAGTGTTGGTGTGTTTATTTCGTCAATAGGCTGGGTCTGGAGAGTAGAAAGGAAGAGAATTTGTCTGACTGGTATTCTCAGGTAAGTACCCAGTTTTTTTCAAAGCTGAGAACATCAATGTCATGTGTATTCGGTTTGGGGAACTATTTTGATTTTGTGTTATTGTTGGTCAGGTAATCATGAAGGCTGATGTGATTAAATATGTTTTTATACGTTGTTGTTGTTGTTGTACAGGTGATCACAAAGGCAAAGATTATTAAATATGTTGTCATTGTTCAGGTGATTGCAAAGGCTGATATGATTAAATATGTTGTTGTTAATCAGGTTATCTTGAAGGCAGATATTGTTTTATATGTTGATGTTGTTCAGGTAATCACAAAGGCAGATAAGATTAAATATGTTTTGTTCAGATGATCGTGAAGGCTGATATGATTAAATATATTGTTGTTGTTGATCAGGTGATCACGAAGGCTGAGATGATAGAGTATTATGACATCAGCGGATGCTATGTGCTGCGACAGTGGTCCTTCGGGATCTGGGAGAGAATCTCGCGATGGTTTGATGACAAGATCAAGGAGATGGGCTTCCAGAACTGTTACTTCCCCATGTTTGTGTCTGCTGCAGCCCTTGAGAAGGAGAAAGAACACATTCAGGACTTCGCTCCTGAGGTACGCCTTGTCAGCTCACTGTCTTCTTCCTCCTAGTTCCCTCTTGTACGAGGTATACTTTGTCACTTGTCTGTCTTCTTCCTCGTAGTCCCGTCTTGTACGAGGTATACTTTGTCACTTGTCTGTCATCTTCCTCCTAGTTCTCTCTTGTACGACGTATACTTTGTCACTTGTCTGTCATCTTCCTCCTAGTTCTCTCTTGTACGACGTATACTTTGTCACTTGTCTGTCATCTTCCTCCTAGTTCTCTCTTGTACGAGGTATACTTTGTCACTTGTCTGTCTTCTTCCTCCTAGTTCCCTCTTGTACGAGGTATACTTTGTCACTTGTCTGTCTTCTTCCTCCTAGTTCCCTCTTGTACGAGGTATACTTTGTCACTTGTCTGTCTTCTTCCTCTTAGTCCCCTCTTGTACGAGGTATACTTTGTCACTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00458	WHEP-TRS	WHEP-TRS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000738	Domain	WHEP-TRS domain	Interproscan
IPR004499	Family	Proline-tRNA ligase, class IIa, archaeal-type	Interproscan
IPR009068	Homologous_superfamily	uS15/NS1, RNA-binding domain superfamily	Interproscan
IPR045864	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43382	PROLYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004827	Molecular Function	proline-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006433	Biological Process	prolyl-tRNA aminoacylation	Interproscan
GO:0017101	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf7602_0.3 global RNA-seq network