Detailed information of PE_Scaf741_2.0 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf741_2.0PROTEIN CBR-CLEC-78Superscaffold57010811470177187-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00008EGFEGF-like domainDomainInterproscan
PF00057Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF00084SushiSushi repeat (SCR repeat)DomainInterproscan
PF00431CUBCUB domainDomainInterproscan
PF02494HYRHYR domainDomainInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF07699Ephrin_rec_likeTyrosine-protein kinase ephrin type A/B receptor-like DomainInterproscan
PF12661hEGFHuman growth factor-like EGFDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR000436DomainSushi/SCR/CCP domainInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR000859DomainCUB domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR002172RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR003410DomainHYR domainInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR011641DomainTyrosine-protein kinase ephrin type A/B receptor-likeInterproscan
IPR013032Conserved_siteEGF-like, conserved siteInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR035914Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR035976Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR036055Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR051277FamilySEZ6/CSMD/C4BPB Neuronal & Immune RegulatorsInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR45656PROTEIN CBR-CLEC-78Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf741_2.0 global RNA-seq network
TOP