Detailed information of PE_Scaf7362_1.9 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf7362_1.9BASIGIN RELATEDSuperscaffold106331732463415700-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF07474G2FG2F domainDomainInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF07679I-setImmunoglobulin I-set domainDomainInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR006605DomainG2 nidogen/fibulin G2FInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR009017Homologous_superfamilyGreen fluorescent proteinInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan
IPR013106DomainImmunoglobulin V-set domainInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10075BASIGIN RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0007411Biological Processaxon guidanceInterproscan
GO:0030424Cellular ComponentaxonInterproscan
GO:0070593Biological Processdendrite self-avoidanceInterproscan
GO:0098632Molecular Functioncell-cell adhesion mediator activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf7362_1.9 global RNA-seq network
TOP