Gene detail

Detailed information of PE_Scaf7112_1.11 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf7112_1.11	BICOID-INTERACTING PROTEIN RELATED	Superscaffold6	21574019	21576343	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf7112_1.11

GCGGAAATGGAAAACGCGACTAGCAAAAACGGTAAAAGATGAAACCAGATGGACTAACTAGCAGGATAAAATTCATGAAATAAATGCTTTATTGCGGATATTCCTCGTCTTCTTACTACCTTATTATAAGCAATACGATGACAATGTTTTCGATGTAATAGGGAATACATTTATTATAATTAATTGATACAAATGAGTTGCGGTGTAGTTGGCCGTTATATCGATATGCTCAAAATGCAAAAAGACAGGGAGCCTGGTTCTGCAAGACATGGAAATTTCATTAATTATTACTCGTTCAATCCCCCTGATCGCAGATTAAGTTTAATTCCGAAGAGCATGCTAAGCGATATTGGAAAAATATGCAAACAACAACACATATATGCGTTAGACATTGGATGCAATTCAGGAGTAAGTGGTAAATACTGGGCGATAAAAGAGTAAGTTAACGTATAGCAGCTGGCCCTGTATCACGATGGCAACACCAGGTGGCAGTATTTCCAATTATTTATATGTCAAGGCTCCACGTTTACGGAACAATCTCCTAAAAAAATAAAGCTTGATTGGCATTAAATATCATGTACAATTCCAAAGTTTTTTTTGTGATTTTTTAAAATAAATGTCTAAAATAAAAATTAAATAAGCCTTACTTAGTCTTAGTAGTTAGGCCTACTATCAATAGACAGTACAATTTGTGTAGAATCCAGACCCAAATCGATGTTGTTGTTTGTTTGGAGTGTGTTGTGGTTACTGACAGGTTACACCTCGAGTCCTCTTATTTATTTTGCTTGTTTTCAAGCTCATGTTGCAAAAAACACCTTCCAATACAACATGCTACGTAATTTATTTAATTCTGCTGAAAATTGAAATCTTGGAGAAACTAAATTATTTTTTATTACATCCATTAAAAAATCAATGGAAATTGGCAACAGCCGATATATTATCAAGGTTTTAAATGTATGGCAAAGTATGCACTCTTATTAAAAATATTTTAATTCTTGAACTGTTCGCACACTGGGGACTTATATGCTTGAATATCAATGAACCTGGTCCACAAATTTACGAGCCGAGGGAGTTTTAATTTATTGTCTGTACTGTCTGGTAAAAAAGTTGGTGCTTATACAATAATTAATGAAGTACTCTACTTCTGCAGGATTTGACACAAGCGCTCCACAGGCACCTGACTGATGAGGCGGGGGAACAAGACCTTCACATCTTGGGCATCGACCTCGATCCAGTGTTAATCAACCGTTGCCGTGACAACAATACCAGGCCAGGACACATCACATACAACAGGGCCGACATTTCAAAGTCTGCTGACAGGACAGGCATCATACAAGTCTACCTGGACTGTCACGAGCGCCAAAAGTTTGACATCGTTTTCTGTTTCTCAGTTACAATGTGGGTGCATTTGAACGAGGGTGATGCTGGACTTAGGTCGTTCTTAGAATATGTTTCAAGTATTGGACAGTTCCTTGTAGTGGAGCCACAGCCTTGGAAATGCTACCGGAGTGCAGTACGTAGGACAAAGAAGCTGAACTGTGAGCAGTACGAGCTGTTTCCTACACTAGAATGGCGCCAAACTGTTGATTCAGATATCGAGCGTTATTTACAGGAACATTGTGGCATGAAATTGCAGGAAAGGTTTGGACAGACAGAGTGGGAAAGAACAGTTTGCTTGCTTGAATCAATGTCATTGCAGTGACAGTGAAAGAAAACAGGTGACTAAAGCAAGTAAGATGTGTTGTTCTGTTGAAGTCTTGTTTTATATACATCTTCAACATACTGTCAAGTTGGTTTTAATTTTAGATTAACATAAGTTGCAACTATTGTTTGTTATAAATGAATACTAGTTTAATATTAATTACTCTGTTTGATAAAACCACATGCCTACGTGATGACATTGTGATCAGATCAATTTAGTTGCAGCCGTTGTAGATATGTGGAAAAGATACAGTACATAAAGGACTAAATGTTTGTAATAATTGATGGATCCAGAACGTCACCGTTTCCCTACATCACAATAAAACTGTTGCGCATGATCTCTGTTAAGCTTTGCCTTACCACCAAATTACTAATAATATATAATTATATGTGCATTACATTGTTAGTGTGACACATCCTCACGCACCAGCGGTCGCTGCTGCTGATTACGTCAGTGCCAGCCAGCAGTACCCCTTGGCTGATCGCTTTGCAAAACTCTGAATTTAAGCTCAGCCTATGAAATTACTTACTAGATCACTGGGTGTCGGCAGGTCAGGTGGTCGTAATAAAACTAATTTCAACCAACCATGGCTCGTGTTACATGCAATGTTTAGGAAGTAGAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06859	Bin3	Bicoid-interacting protein 3 (Bin3)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010675	Domain	RNA methyltransferase bin3, C-terminal	Interproscan
IPR024160	Domain	Bin3-type S-adenosyl-L-methionine binding domain	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR039772	Family	RNA methyltransferase Bin3-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12315	BICOID-INTERACTING PROTEIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0008171	Molecular Function	O-methyltransferase activity	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:2000632	Biological Process	negative regulation of pre-miRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf7112_1.11 global RNA-seq network