Detailed information of PE_Scaf6873_1.9 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf6873_1.9CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBERSuperscaffold72158057421618989+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07521RMMBLZn-dependent metallo-hydrolase RNA specificity domainMotifInterproscan
PF10996Beta-CaspBeta-Casp domainDomainInterproscan
PF16661Lactamase_B_6Metallo-beta-lactamase superfamily domainDomainInterproscan
PF21386IntS11_CIntegrator IntS11, C-terminal domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001279DomainMetallo-beta-lactamaseInterproscan
IPR011108DomainZn-dependent metallo-hydrolase, RNA specificity domainInterproscan
IPR022712DomainBeta-Casp domainInterproscan
IPR036866Homologous_superfamilyRibonuclease Z/Hydroxyacylglutathione hydrolase-likeInterproscan
IPR041897DomainIntegrator complex subunit 11, MBL-foldInterproscan
IPR048662DomainIntegrator complex subunit 11, C-terminal domainInterproscan
IPR050698FamilyRNA Processing Metallo-Beta-Lactamase Domain-Containing ProteinInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11203CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBERInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0004521Molecular FunctionRNA endonuclease activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0016180Biological ProcesssnRNA processingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf6873_1.9 global RNA-seq network
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