Detailed information of PE_Scaf6856_2.4 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf6856_2.4COLLAGEN ALPHASuperscaffold570591817073068-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF14670FXa_inhibitionCoagulation Factor Xa inhibitory siteDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR050525FamilyExtracellular Matrix Assembly and OrganizationInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR24020COLLAGEN ALPHAInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf6856_2.4 global RNA-seq network
TOP