Gene detail

Detailed information of PE_Scaf6816_1.3 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf6816_1.3	THYMIDINE PHOSPHORYLASE	Superscaffold12	16301235	16303384	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf6816_1.3

ATGGACAACGTGATAGGGCGCACTGTTGGCAATGCCCTTGAAGTGGCTGAGTCCTTTGAGTGTCTTCGCGGGGCCGGACCGTCCACGCTGAAGGAGTTGGTGACAAAGCTAGGTATGATAACGTGCAGGCGTACACATGCACGCACGCACGCACGTACACAACCACGCACCCAGCCACGCACGTATAAACACGAAAGCACATACAGACACGCACGCACGCGCACACACAATTTGGGGAAGTACGTGGAAGGGTGAAGAGCTCGGTAGATGACACCAGTCAATCACGGCGTGGAAGGTGACGGTTTTAAATGACGTTATAAACTTTTACAATAGCAAGTGGATTGCCATGGAAATCGCACAGTTACCCACACGGTTAAAATACAAGAAACACTGACAAGTCTGTGTGTGTAGTTATTGTTTAAAATTAGGTTATTATATTGTGTTTGTCATCAGGCGGCCATCTTCTGGTGAATGCTAAACAGGCGGCAGATGTGGACGAAGGTGAAAGACGGATCGCAGACTCGCTAGAGAACGGAGAAGCCATGAAGAAGTTCGCCGCCATGTTGACGGCCCAGGGCGTGTCCCCAGACACAGTAGCTCAGTTGACACAATCACACGAGCAGACCATCGCTATACTCCCCACGGCAAAGTACACAAGAGATCTCTACTGCAATGATACCGGTAGCTATACAGCATATTCTTGAAATCGGTATTTATTGTATGCAATGATGTTCGAATCTGTTTAAATTTGTATTACCTTAGTCATTGTTTATCGGCCTATATAATTCTTATTCCGTTCGAGGATAGCCATCTAACACATTATTATTAATTAATTAACTTATTTATTCTAATTTGTATAATTTATTTATTAATTAACTGTTTTAACTTATTACCTTATTTGTATTGCATCTATCTACATTTCTGACTTATTTACTTTTGAAAGATATGCATTTTTGTACCTATTTATATGTACCGATTGTATGTGGGTTTTACCTGAAGTAAATGTATTCGTATCAATATAACAACAACAAAGACAATCTACGTCATATTGTTGTACATTTGTTATTCAAATGAGTCCTTCTGTCACGAATACAAGATGTAACTGATTTTATCATAATGTTTTTTATGTTAAGCAAATCCGCATAAAAACGGCATACCGTCCAAGTCCTCACAACATTCCAAAAATCCGTAACGTATACAGGGAATAATAATAATATATTTATTTGTTCATAACATGCCAACACATTTTGCTATGAATCAATACGTAGTTGTATATTCGCACATTCAAAGACATACTAGAGTAGATGCGCACGAGTTAAAACACCGACAGAAAGAGTAGGTTTACTGTTTACTGAGAACATTCACTATTAGATATATTCTTCAAGCGTCAGACCTGTCGAATCTCAATTGAGCAGTGTTCTACGACACGCTGGGAGTCCGTTTAAAGTTGTGACACTTTTACGATCATTAACGATTACTTTCTTATGCGCTTACATACCAAAATACATATCTATGTCTAGAGAGTCTATGACTCTGCCATTAGACTTTTCATTAAGCACCTCAATGTCGAATCCATGTCCGAGGACTAACCCTAACCGTATTCCAATCGCTAACCTTAACACTAGCCTAAGCAAGGTGCAAAACCCTAATCAGTGCGGCAGGTAAACAGAGATTCACCCAACCCTGTTGGCGGTCTTGTTGCAATTATGTTTGTAACGCAGGGTGGCCGTTGGTGCCCTAGTGGAGCGCAGTGATGCAGTGTTTAGAGCTTCGCACTCTCGACCGTTAGAACCCGGGTTCGAATCCTGTGCTGCGGTTTTGAACCTTGGGAAAGGCCATTTACTCTACGTTGCTCCAGTTCACTCAGTTGTCTGAATGAGTACCTGGCTACAGAGAATGGTGGATATTTGTGTACCAATAGTCATCGCGCATTGATTGCCCGTTGTCGTACTCACGACGTGATTACCGTTACAGGATATGTGACGGCCGTCGATGCGCGTGTATGTGCCGAGGTGTCGGCCAGACTGGGCGCTGGACGGATGAAGGCGAGTGACATCGTCGATCCTGCAGTCGGTCTACAGCTCTACGTAGACGTAGGCTCACACGTACAGAAAGGTCCGGCACAATCGCTTCTCTTAAGCATTTCATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07831	PYNP_C	Pyrimidine nucleoside phosphorylase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000053	Family	Thymidine/pyrimidine-nucleoside phosphorylase	Interproscan
IPR013102	Domain	Pyrimidine nucleoside phosphorylase, C-terminal	Interproscan
IPR035902	Homologous_superfamily	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily	Interproscan
IPR036566	Homologous_superfamily	Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10515	THYMIDINE PHOSPHORYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004645	Molecular Function	1,4-alpha-oligoglucan phosphorylase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006206	Biological Process	pyrimidine nucleobase metabolic process	Interproscan
GO:0006213	Biological Process	pyrimidine nucleoside metabolic process	Interproscan
GO:0016763	Molecular Function	pentosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf6816_1.3 global RNA-seq network