Gene detail

Detailed information of PE_Scaf6782_9.13 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf6782_9.13	DNA-DIRECTED RNA POLYMERASE	Superscaffold7	31902982	31907079	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf6782_9.13

CTTAGGCTTAACTTAAGGGCTATATACATTATGGTGTCATCAGCAAAAAGTCTAACTGTAGATGTAATATTGTCTGGGATGTCATTTATGTAAAAGAGGAATAGACAAGGGCCAAGTACAGAGCCTTGTGGTACTCCTGATGTTACGGGTACCTCAGAGGAGGCCTCGCCCTCTATTATGACTCTGAGTTCTGTCTGTTAAAAATGATCGATAATTATAATTAACAGTAACTTATGTTTCTAAAATTGTGGGGTCATGTAGCATTAACATGTGTAAACGGCATTAAACAAAATGCCGAAATCCCATATGTTCTTTACCTTGTTTGTTCACATACCTTTTTGCAGGGATTTTACCCAAATATCGACGATCGCTTTGGAATGCCGTCTGTGATGAATTAGCCATAGTGATAACGTCTGAATACTTTGCTGCGAATTGTTAAGATCATCCAATTTCTTTGCAAAGTTAGATTCTGAAAACGATGTCATTATTGCCAATCCGCGTCACAATTTCTGCAAACAACTTAGCGCATCTTACAAACACTTAGCAGCCACCTCGCCTTGCAAGCCACGCTTTGTTATGATCTCGTTTGTAAACGAGAACTAAGGCAGACGAGTCTATTACATTAATTAGGGTAATATGAACGTTAAGATTGGGTTTATAATAAAATATATTTGTTATTTGATCCTGTGATAAGCAACTAATATCTAATTTTAAGAATACAATGAATTGTTTATTAAGCAGTAACCAACCTATGCCAAACTGCGTAACTTGTCAATGGTGTTATTGACAGTTATACCTCCATCAATATAGTCAGATTGCCCGTGTATGGCGCTGGATTCGTGTGCTGCTTGTTGATAGTGCATTTGTTTTGCGAATAATTGTCTAGTTTTCACATACAGATATGCCGTACGCCAACCAGCCAACGATAGCTATAACAGAATTGACAGATGAAAATCTAAAGTTTATTTTAGAAGATACCGATCTGAGGTATTGTGGAAATTGTAAAAACTAAACGTGTTGACGGTCGATAATAGGTGTAAATAACATTTTCTTGACGTTTAGATGGGTCCTGAAGTTGCGTTATTGCGTATTTCGCTGCGAACATGCAAATCGTTTTTGGTGCGTCTGCTTGTCTGGCAGCCAGAAAAACATTGAAAGTTGAAACGTCAAAACTTCACATATTTTATTGGCTCCGATTCGTTGCCATTGGTCGTGTCAGGTTGTGCATTTCTTGTTTTTCCAGCAGGTAGCTCTGCAACTCGCCTCGGTTTATAATTACAAACCTGTAGAATCAACATGTAGTGTGTAATGGTCAGATACAAGTCCGCCTATTAACAATAACCTGAAAAACAACAAGAAATCCATATATTGAACAATTTTATAGTATAATTTATAGATTGAATTGAAAACAAATTCTTACAAAAGTTGTTTTGAGTAAAGTACTTATGATTATTGAACGGTTGACAAAATATCACAAAAATATGCTATGTGTACCATGTTGTACTATTTACATCCAACTGCATAATGTAATACAAAGTTCCATCACGTGACCAGTGAAAGAATACACATCAGCAGGCTATATATAGATTTAAATTAATTAGATCTGCAAATGAGACTGATTTGACTCGGATTATGTATGATGACATGTAATGATCGTTGTTGTGCACAGAACTTATCAACTGTTTCTTACATTTTTCAGTGTTGCAAATGCTATCAGAAGAGTCTTCATAGCCGAGACACCAACGATAGGTAGCAATGTTTTTCTTGAATACATTTGTAGAGCTATGTACATTTCACTTTTGTATATTGAACACACACACATTATTTTATATATGATTGATGATATACATTAAATTCGAAAGATTCCAAATTTTTTTTTAATATCTTTTATTACAATTTAAAAACAGTTTTTTTACTGTTAAAATTAAAAGTATGGTTTAACCTTGGTACAGGGATTGAACATAATGCTGTATTATATGAAGCATTATATACAATAAGTTTACTGAGATGGTATATTTTCAGCTATTGACTGGGTTCAGCTTGAGTCAAACTCCACTGTCCTTTGCGATGAGTTCTTAGCACAGCGTGTTGGCCTTATTCCTCTTACATCCGATGAAGTTGTCGACAAAATGCTCTACAGTAGGGTAAGTTAGACTTGATGGTCATGGTGCACACCTTATAATTCACTTCTCTTAAAAAAGGTTTTAACAACTGGTACATTTTTTAAAGTTATCACAGTATCGTAATAGATTGTCTCGGTCATCGGGTCAGTTCTATTTTGTCAATTCAAATTCCAGTCAATTAAAAAAAAATCAATCCCAATGCAACCTTGCAAAACATTCAATTCCAAATGATCAATTCCAACCAAAAAAATCCTTAAGGAAAAATTATGTTCAATTCGTTTTACAGTTTTATTTGTACTGCAAAACATGTGGAGTCATATTAATTAAACATGATTAAAAAACACTATTCATTCATAGTCGCTCCATTAATCAAGTTCATTAACTCATGGCTGCTGCTGCTTCAAACAATTAAATTTCAACGAAAATCAATTCCAATTAACTTTCAAAAAACAATTTAAATTCCAGAATTGGAATTGAGGATCAATTCCAGAATGGATCACTAGATTATAATAAATAAGTTACTTCTTAAGCATCAATACCATCAGAGAATCCAAGCTCAGTGGTGCAACAAAACCAAAGGATTAAGCATAATCGTACTTGTGTGCCAGGCGAAAGTCATCAACAAATGTAAATATAAATAAAATAAGTCTATTGATCATCAAATGTGTCTTGTGTTGTGCAGGACTGCACATGTGACGAGTTCTGCAGTGACTGTTCGGTCGAGTTTACGTTGGATGTCCGGTGTACGGACGACCAGACCAGACACATCACCAGCGCAGACCTCATCTCCAGCAACCCCAAAGTTGTACCTGTAAGAGGCAACTCATGTTGCATTGATTTTATTACTCTGTTGGTTGCTGCATTCCATGTTTCTTTCCAGCATTTTTCATATTTCCATTTCTTTGGTTTTATAAGGTTAATCCGTGATGTCAAATCTTACAAGATTGACATCAAGGATTAACCTTATAAAACCATTATTACTTGCAGGAAAGATTACTGGCTAGTAGGTAAAGTTCAATTTGCAACATTGATTAAACATATTGCACGGCCATAATAACAGTAAACAACACATTTCCCGATGACAATTTTGTTTACCATTTTCTACATTTATTGAAGGTGCAGTTAACATATGTGGTGGAACATGTTTGTATTATAGTATCAGTGTCTGTGCTTCACTTATATCATTTACTGTGTTGCACTTGACTAGGCTGGTGTGCCTCTTTAACTGCACTGTGTGTTCTCTGTGGAAAAGGGTGACATGTCATATGCCAGTGTCATGTTGACAGGTGACATCTCGACACAGAGAGGATGAAGGGGAATATGGAGACACTGAAGGTAGGTCTTGAACGGTTGTATGGCAGCAAGTTACAGGAAAACAATGATGAACAAAATTTTTTATTTTTGTATTAATTACTGTTTCATACATTATAGAAGTACCTTTATGGCACAAATATTGTGTGTTTTGAAAGTTATATATATGCATACAATGCCACACGTTGATTTATCAAAATGATAATCAGATTAATAAAAAAAAATTAAATCCTGATGAAAACCAAGACACTGCTGAATAGTCTGTTTGTATTTGCAACTGCTGATCAACAAAGATTACCCTCGGGCCCATTTCAGACATGAAATCGTAACATAGTTATATTAAAAATTATACCAATAATTTATTAATGAAGTCTATGAAAAACATACTAATAAAATAATAGTACCATAGATTACTGTGGCTACTGTAGCCAGTCTGTCACATGACTTCAGGTGAGGGATCAGTTTAGTCAGTGTCAGCTGTTGACTTGCAGATATTCTCATTGTGAAGCTGCGTAAAGGCCAGGAGTTGAAGCTACGGGCGTACGCCAGGAAGGGCTTTGCAAAGGAACACGCCAAGTGGAACCCGACGTGTGGCGTGGCCTTTGAGTATGACCCAGACAATGCCCTGAGGCACACCACATACCCCAAACCAGAGGAATGGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01000	RNA_pol_A_bac	RNA polymerase Rpb3/RpoA insert domain	Domain	Interproscan
PF01193	RNA_pol_L	RNA polymerase Rpb3/Rpb11 dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011262	Domain	DNA-directed RNA polymerase, insert domain	Interproscan
IPR011263	Domain	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	Interproscan
IPR036603	Homologous_superfamily	RNA polymerase, RBP11-like subunit	Interproscan
IPR036643	Homologous_superfamily	DNA-directed RNA polymerase, insert domain superfamily	Interproscan
IPR050518	Family	Archaeal Rpo3/Eukaryotic RPB3 RNA Polymerase Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11800	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001055	Molecular Function	RNA polymerase II activity	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005665	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf6782_9.13 global RNA-seq network