Gene detail

Detailed information of PE_Scaf6754_0.6 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf6754_0.6	TUBULIN FOLDING COFACTOR C	Superscaffold1	94836924	94842629	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf6754_0.6

TGGCTTACCCCACCCACAGCACACAAACCAACAGCAGTAGCTACCACCATTACAGTACTTATATCTAAAATTTCTGCTGACCATCTCATTTCTGCTCTCAAATTATGGCGATAGTAAAGTGAACATAACACTATTGTGGTGCCCTCTGGAGGAGAGTGGTTCACCACTCGCTGTTTCCATGTTTATCCGACTTTTTGAATTTAGCAAACGCCTGGGCCCGTATGCATGTAGACCGGATAAAGTTAAACGCGGATAGCCGCTATCCGCGGATAGCTATTCGCGTTTAACTTCTGTTCTCATTTCGTATGCACAAGTCATGAATAGGTCGCGGATAGCTATCCGGTCGTGTTAAAGTTTAGACTGGGGAATTCCCGGCCACGCATGGGATTCTGGAACTGTCGATCTCACTTCCGCGAAAATGGAAAACAAGCAGACGACAAAAAGGCCGAGGAAACCAAATTTCACTGACGCCGAAATCATAGTACTTCTGGAAGAGATAGGAGTCGACCACTATATCCTGTTTTGCTCACATAATCAGTCAGTGACAAAAAAATAAAAAAAATTGGAGAAAGATAACATCGAAAATTAGTGCGTGCGGTGTAGCCGAGCGGTCGCCGCAAGAGGCAAAAGATAAGTGGCAGGCCCTCAAAGGGGCTGTCTTGAACCGGCAGAGGGGCCAGCAAAAAACTGGCGGTGGGCCGGCAGAGAAGACTCTGCCGTATGAAGATATGATCCTTGCGATAATCGGGGATAATTCTAGTCTGCTGACTGGAATTGATGGTAAGCACATGCCGCTTTTCTTACTTTGATTAACAAACGCACCACTGCTAAATTTGGTGCAGCGATGTTTATTACGAGAGACGAATGGTTTAAGGCACTCTGTAAACCTAGGTTACTGTGAAATTGTCCTTATATGTGAACCATAATGCAAAATGAGACGCTTCTCGAAAAACATGCTCATTGCTTTTATTGCATGTTTGAATAGCGCACGCTCAGAGAGACAGAAACATGATACCTCAGTGTTACATATAATCGCATTATTTCCAGATATACAGCAATTTGAATGTCAAAAATGCAATAAAATATGGTTTTGAGAAAAACTACTTGAAAAGTGTTCACTCTAGATATTGGCTATGGATTATTTCACGGTGGAAACTCAATTTCCCAAAAAATTGCTGTGTACAATTTGAGCACATGAATAAGGAACAGAAGCAAATGTGTTACTTAATTCCAGTTGTTCAATAAATACCACTGTACTGTATTGGACATTATGCAATAATAAGTTAGTATTAATAAAAACATTATTAATTGTTTATGAAGAAATTGCACATATTTTATGTTTTCTATATTTCAGTGCAAGGGACAGACACCTGCACGGAATTTGAATGTATACAAGTCTTGGACACCAGTCTGAATACTTGTAAGTTCTCATGTGATTCAAAATAATAAACAGGGAAATCATGATGCCATGTGAAATTAATAAATACTAAACAAATTGGTGTCTAAAATGTTGTGTTATATTTCATCCAATGCACAAGTGGCCATATTTGTGCACGTTTAAAAAAAATGCAGTATTTACAAAATGTTAACAATGAACAATAGGGTAATTTCATGCCAACCCAGCCAGGTCCCGGGTGAATATATATTTTTTTAATTAAATTTTACCCATGTGTGCATCTAAGTAAATGGTGTTTACAAGCAATGTTTAAGCCAGTGGCAAATTGTAGTTGTTTAAAAACGTATGGTTGTTTTAATGCAGGGACCACAGTATTATTCACATTCATACTGTTGCATGCGGTTTTGTGGGATTTTTAAATGGGTTCTGTTGACAATTTTTTTCGCCGCTGCGTTTCTCAACTGTCAGCTTCGCCTCGCCGATCATGATATCAAGAACATGTGTTTATGTGGCTTAGAAAGTGAAATATTTGGATAACGGAATTCTGTGGCGATTATTGTAAAATAATCCTAACTGAAACTCCTCATTGATCTTGGGTGGGGACAAGAACAGTTAAAAGACAGCACATTGTATGCGACTAATGATTACATTAACAATAATAAATGAAAATAACTTTAATGTCATGTAAATTAATATTTATTATTCATGAAGAAATCTGTTATGTTTTATATATTTTAGTGCAAGAGACAGGTTTCCAGCCAATAGAAGATTGTGACGAAAGTCTGAGTACTTGTAAGTTCTCATGTGATTCACCTTACTTGCAAATCAAATGTCCCTCGCAACTGAAAACAAATAAATTAAAATAACTTTAATGTCATGTAAATTAATATTTATTATTCATGAAGAAATCTGTTGTTTTATATATTTTAGTGCAAGAGACAGGTTTCCAGCCAATAGAAGATTGTGACGAAAGTTTGAGTACTTGTAAGTTCTCATGTGATTCACCTTACTTGCAAATCAAATGTCCCTCGCAACTGAAAACAGAGCATCATGTCCCATTTTTGCCCTCATTAATCACATTACAATTCTTTGCCCATGTTAAGAATCTAATATCTTGCTACTGAAAACAGATAACAGGCTCATATATACAGTAAGTGGGACCGAGACCTTGATAATCTGCCTTCATAAATGATGTAGCTATAGCCACTATCTATAGGCATCCCAAGATGAGAAACATAATATATTCAGCCGGTTTCATGACTTCAACAAATTCTTCATGGGCGCTCCATATTATACATGCCTGGTGTATACGTGTAGGCATGATCTCCCACCTCCCCCCAAACAAGAATAATTCAATCACACAATGTTCTCACTGTATACTAGAAATTATACAACCATCCATTCTACATAATGTCTTGTTGCAGCTGCATCCATTACATGTGCAACACAAGAAGCACCAGGAGCATCATGTGCCAGTGGCACAGGAGTGACGCTAATGTAAAAAAGGCAAATTTCACCAAAATCCAAGTGGAAAGTGCTTGGAAAAAGGGCTGGAAGATGAAACTGGCCTCTTTGCTGACTACCTGCGCAGCGAAATATAAAAAAACAAGATGATGACTGTTTTGATGGATAACAAAAACAAAAAAGTCTTGCTTGAGATTGAAAAGCTTGAACAAGACTTCGGCAAATGAAATGAATGAATTGGCTTAGATTGCAAAATGACAGTGGTGTTGCTGCCCACACGTTATTTTATGCACTATTTGTTAAAGATTGTGGGACTCTGTTTATCTGTGTGTCTGAGCATACCTCCGCCAGTGTTGCATGTATGTGGTCGACATTTGTTGTTGCATTAGCATGTAGTCATATGTTACTGTTTGTTGTACAACTGATTGTTGTGGTCTAAAATGTTAAGAAATTAAGTCTTATTCCAACTGATTCAACAGTTTGTAATTGAGAAATGCAGTGTCCAAATGTAAAATGAATTCATTTTTTATAACGATAATGCAATAATAAAACATCCTATAAAAATGATGAGTGATCAAACACTGATACATCGTCATCGACAGTTATTGTTGTTTTCTCAGTCTAGGGCAGCTTTCCAAACAGCAACCCGGGTCCGCTGCGAAAAAGGGTTGTTGCAGGATGAGGTTCAATCACACCGTTATCAACAATAATTGTTGATTACTCGGTCTCGGGCACCTCTTCCAGCAGCAACACGGGCTCGTTCTGGCACAGGGTTGTTGTTTGCAGGACGCGGTTCATCCACATCGGAATCAGCATCTGAACTCCCCGAGGAGGAGTCCCACACAGACGCACGCACGCACGCGCATGCACGGACGCGCGCTAGCTCGATTATAGTTAGACACTATGCACCAGAGGCGCCACACGATTTTAGTTTCAAATTCACCGCTACGTGGTGCCACTTAACATTGAGCCTCCGTTGTGTCAGCTATTACTTTTATTTGTTATTTTATTATAACACTTACATAATCCAACTACATTTATAACTATTACTACTACTTAACGAGGGGAATGTCTATAAAGAACATTACAAAATATGGCTTGTGTGGATTATCACATGACCTTTGCTGTTTAAACATGGCTGACAACGGAGATGTTTGTTCTGGCGAAGTTAATATGACTGATAAAAATGTTAATTTTACTCAGAAGAAAATGCATGTCACCGAGAGATTACAGCGACGAAACGATGAGCGGGAAGCCGACATCGAGAAGCGAAAAGCTGTGAAAGAAGAGAATTCCGCAGCGCACGAAAGCACCGATTTCTTCATCGAAAACTTCGCGCGAACGAAGAACGATTTGGAGCGGAAACTAGAAGAAGAAACCGACGCCGCGTCCACTTCGAAAGCAGATCAGTTGTTCTACTGTGATACGATCTCCGCAGATATTCAGAAACTACAGAAGTTCCTCACAGATTCAACGTTGTTTTTACCCCCGTTTGAAGTACAGAAAGCACAAGCGATCATCAACAAACTGCAGAATTCTGTTCAGCAGAAACGGGAAGAACTTGTACCGCGAAAGAAGTTTGCGTTCAAGTCTAAAAAGAAGCAAACTACTGACAAGCCACCACCAACAAAAGCAGAATGTAAACCGGAAGTGTCACCGCCTAACAAAACTCTTCGCAATATCGATGTGTATGAGTGCAGCTTCAAAGACTTGAGTTCTCAGACATTGACTAAAGGACCTGATGATGTAAACCAAAAAGATGTGGCTCTGTCAAAACTGACAGATTGCACTATAAAGTTGTATGGATCTCCAGGTGCGATCCATGTCAGCAACCTCCAGAATTGCCATGTCTTCACCGGCCCTGTGTCGGGATCCGTATTCATTGAAGGATGTCAGAATTGTGTATTCGTGTTACCATGCCAACAGCTTCGTGTCCATGCCGCCTATGGTAGTCAGTTTTACCTCCATGTTACGAGTCGTGCCATAATCGAGGACAGTTCTCGGGTTGTCTTCGCCCCGTACAACTGGAGCTATGAAGGCTTAGATGAACACTACATGATGTCTGGACTGGACAAATCAAGGAACAGCTGGGACGATATAGATGATTTCAATTGGCTAGCCACTGATGTGCACTCTCCAAACTGGTCTGTGTTAGAAGAAAACAAACGTGTCAAATGCTGGGAAGCATAACAAAAATACAAAGAAAAGAATTTCTGTTTTCAGAAGAATGTGATGCTTCTAGCTTTCATGACTGTATCTAAATTATTTAAGGTCAGCTTACCATAATTCTTGTACATTGTCATGGCATGTGGCAAGGAAGTACAGTTACTTACCTAAGTTATGCTTATTCCGGTGACTACATGACTGAGATCTACACATAGATGATTTAATTTTATGTACAGGTACATACAAACTGCACATTAAAATTGTCAATTTGTGTTTGTTATTCTGTGATGTTAACTTTAATATATATATGTAAACAATACAAAGTTGAGGTGTGCAGTTACATCAGTAGATTAATTATTGTAGCATGACGCTATTGTGACAGTTACAACTGTTTCGAGATTGTCCCTTACAGTGTACATTTCAAGTACTGAGACAATCTCTTGGAGTGCAAGTTTCATGTATCATACATCCAAGTTTTTTTAGACAATCCCTTACAGTTATAGTGCAAGTTTCATGTGTCATATATCCATTATTGAAACCATTCCTTGGAGTGAAAGTTCCATGTTGTACCATACATCCATGTTTTGAAACCATCCCTTAAAATGCAAGTTTCATGTACCATGCATCCATGTTTTGAAACCATCCCTTAAAATGCAAGTTTCATGTACCATGCATCCATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07986	TBCC	Tubulin binding cofactor C	Domain	Interproscan
PF16752	TBCC_N	Tubulin-specific chaperone C N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006599	Domain	CARP motif	Interproscan
IPR012945	Domain	Tubulin binding cofactor C-like domain	Interproscan
IPR016098	Homologous_superfamily	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	Interproscan
IPR017901	Domain	C-CAP/cofactor C-like domain	Interproscan
IPR027684	Family	Tubulin-specific chaperone C	Interproscan
IPR031925	Domain	Tubulin-specific chaperone C, N-terminal	Interproscan
IPR038397	Homologous_superfamily	TBCC, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15139	TUBULIN FOLDING COFACTOR C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0007021	Biological Process	tubulin complex assembly	Interproscan
GO:0007023	Biological Process	post-chaperonin tubulin folding pathway	Interproscan
GO:0015631	Molecular Function	tubulin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf6754_0.6 global RNA-seq network