Gene detail

Detailed information of PE_Scaf6608_2.3 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf6608_2.3	ATP-BINDING CASSETTE SUB-FAMILY B	Superscaffold12	57338000	57346579	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf6608_2.3

ATTGAATGGCTTCAGTCTGGACGCGGCCGTGGGCCAGACTGTGGCTCTAGTCTCACGGTGAATATTGACCACTTACAGGTGTTGAACGGCCTCAGTCTGGACGTGGCCTTGGGACAGACTGTGGCGCTAGTCGGACCCAGCGGTTGCGGCAAGAGCACGGTTATACAACTCATCCAGCGCTTCTACGATCCGACAGAGGGCAGTGTCGTCGTCGACCAAAACGATATCCGTTCTCTCAACGTCCGATGGTTGCGCCACCGAATTGGTAACGAAGAAATGTGTGTGCGTGTGTGCGTGTGTGCGTGTGTGCGTGTGTGCGTGTGTGCGTGTGTGTGTGTTTGTATCCCTTCCAACCCGCACCGGCCAGCGTGGAAGGGTAGGCCAACAACACCAGCATGCAAAGTACAATGAAACCAAGGCCCCCAGTCCCCAGCAGCATCGAAAGAGTCTATGACCAAGGAGGCGGTTCGGGTAAACTACGACAACGTGCAGGGGGTGCTAAGAATCTATGGGTCAAGAAGAGCCACCGAGAGAAGGTAAGTAGACTGAAGATAGCAACATATAACGTAAGAGCACTACTAAGAGATGAACAGATACAAGAACTGGAGGACGAACTTAGGGAAACCAAGTTGGTATGGGATGTGATTGGGATCGAAGAAGTCCGAAGATGAGAGGAATGTTTCACTGCCTTACAAAGCGGCCATCTACTATACCACTCCACAGCGAACAACGGCCAAGCAGGAGTAAGCTTTCTCATAAACAAGAGATGGAAAGACAATATAGTTAACAGCATCAGCCCCAGAGTAGCAGAACTTGTTCTATGCATAACAAAACGCTACAAACTGAAGATAGTACAAGTATATGCACCAACAACATCATACTCAGAAGTAGACACAGACAACTTCTACAACGACGTGGATGATGTTATGTTGCGGTGGTGCTTTGATTAGAACTGTACATGGCATAGAAAGTGTTATAAGTATTTATTGAATTAATACAATCAGAATAACTCGCTGCGCGCCATCGTGACACGTACTTGACCCCGTGACCCCGATGCCCAGTGTCGCTGTCGGAGAATGTCTCAATAATAAATACCAATATCGTGACATCCTCCCTCTTTTAACAATAGGAACGAAACAAAACAGAACTATACAACACAGGCGCTACTGCTGATAGTCTGCTAAATACGCCGGTGGCCTGCGAGCACGTGTCTCTCTGCGCGTCGGAGATGGGGTGACACGTGCTGGCGTGACAGGCGTCAATTCGACATCTTCACGACGCGTCTTCATGAGTTGGCGAATCGTCCGGAGGTGCCGTCTTCCCAACTGGGCGACTCTTCCGGACGTGACTCTTCACGGTGTGTAGAAGGCGCCGCGCGTGAACTATCAAGTAGCGACGCCGGCAGCCTTTCGTCGACGACCCGTAGAGCTCGCCGGTTGCGCCTGTACACGTGACCGTTGATCAGCACAGCATACGAACGATGGGACAGCTGCTTCGTGCATTCCCCAAGCGTCCATGTCTCGTCGCCAGGCAACTTAATCCGAATTGCACTGCCCAGTGCTATCGGCGCCAGGTAATGTGCCGATCGGTTGTATTGTGCACACTGCGCCTTTTTGTTTGCGGCTCTCTCGCGAGACACATTGACGGCGAGTTTAGGTTTCAGCATCCTGCGTTGGGTCGGTAGAAGTGTTCTGCAGCGGCGTCCGAATAACAGTTGTGCCGGAGACGCGCTGTAACCTTCACGGACGGTGTTCCGGAAACTCAACAGCGCCAACTGGATGTCGCCGCCATCATCGATTGCCTTTTTTACGAGGTTCTTCACGGTGCCCACGGCCCTCTCGACCTGACCATTACTCTGGGCATATCTCGGACTGCTGGTTATATGCTCTATGTCCCATTTCTTCGCAAACTCTTGGAACTCGCCGCACGAGAACTGCGGGCCATTGTCCGACATAAGAAGCTCTGGTGACCAATGACGCGCAAACTGGGATCTCATCGCGTCGATCACACACTTCGCGCGCGTACTTGACGTCAATCTCATCAGCTCGAAGAAGTTTGAATAGTAGTCAACCAGGACTAAATAGTGTTGGCCATGCAGTTCAAACAAATCGGCGCCAACCTTAGCCCACGGCCGCCCAGGAACGTCATGAGGCAGCATCGGCTCTTTGCATTGATCTGGCCTGTGCGAGTTACAGACGCTGCATTGACTGACGTAATCGGCAATTTGCTGGTTCATCAACGGCCAGTAGACGGTGTCCTTCGCAATACGTATGCAGCCCTGTATCCCTTGATGCGATCTGTGAATAGACGAGATGATGTCCTTGCGCAATCGAGCGGGAACCACTACCCTGGAGTCTTTGAACAACAGACCATCCTGCACCGTCAGTTCGTGCCGCACACTGTAGTACGCTCGAAGATCCAGATCAGTGTCCGATTTCTGCGAAGGCCACCCGTCCACCGTCACCCGGATCAGTTTCTGCAGGACACGGTCCTCACCGGTGGCTGCTTGCAGCTCTTTCAGTCGGCTTGGCGATACCGACAACCCTTTCGTCATGTCGATCTCTGCGATGTTGACGGCGTGGACATTCGGCTCGCCGGGAATGTACGCTCTGCTCAGTGTGTCGGCGATATGCATATCGATCCCACGTGTATACGTCACGTCCAAGGTGTACCGCTGCAGACGCAGCATCATGCGCTGTAGGCGTTTCGGTGCAGTTACGAGAGGCTTTCTGAAGATCGCTTCCAGAGGCTTGTGGTCACTCTGCACAGACACATTCTCTCTCCCGTATATGTACTGGTCAAATCTCTCGCAGGCGAACACGATCGCGAGAAGCTCTTTTTCTATTTGGGCGTAGTTTCTCTCGGTCGCCGTCAGCGCCCGAGACGCATACACCACCGGAAGTCCATCTTGTAGCAAACCCGCCCCGAGACCGCTGTCTGATGCATCGCACTGGATACACACTGCCTTCGTCACATCGTAGTATTGCAGAACCGGCGTAGTTGTGAGGGCCCTCTTCATCTCATTGAACGCTTGCTCGTGGATATGTAGCCAACTCCATTCAATCTCCTTGTTCACGAGATGTCTGAGCGGCTCAAGTATCGCTGATAAATGTGGCACGAACTTCGCAAGGTAGTTGACAGTACCAAGTAGCCGCTGCACCGCCTTGACGTCTTCCGGAACCGGCATTCGCACGATGGCCTCGACCTTCGTAGGGTCCACCCGGAGACCTGATCGCGTCAGAATATGTCCGATGTACGGGACTTCCGTCAACTTCAACTTCATCTTGCCCGCGTTCAACCGTAAGTTTCGCTCTCTAGCCCGCTCCAAGAATGCTCGCAGGTTCTGGTCGTGGTCAGCCTCCGCTTGCTCATCAGTAGCACCGCAACCGACGATCAGGAAGTCATCGTGAATTACTTCAATGCCGGCCAGGCCTTCCACCAGTTGATTCATTGAGCGCTGCCAGATTTCCGGGGCTGAGTTTATGCCAAACGGCATCCTCAACCACCGGTATCTGCCGAATGGCGTGTTGAAACAGGTTAGCATGCTGGACTTGTCATCTAGCGAAATCTGCCAAAACCCGTTTTTTGCGTCCATCACTGTGAAGAAGCGTGCCTGTTTCATTCGAGTGCTCACCTCCTCGATGGTTGGAATCGGGTAATGCTCGCGCCGAATGGCAGTGTTCAGGTCTTTGGGGTCTAGACACAGCCTGATTTTCCCATTGGGCTTCTGCACGACAACCATGCTAGACACCCAGTCGGTGGCTTCTGTTACGGGTGCTATGATTGCATCGGCCACCAGCTCGTCGAGTTTCTCCCTCAGCTGTTCACGCAGTGGTACCGGTACACGTCTTGGAGCGTGCACTACAGGCCTCACAGACTCGTCAATCTGGATAGTGTACGTGTCCTTGAGCCTGCCTGCGCCCTTGAAGACGTCTGCATACTCGGCTAGCACGTCGTTCGCTGTCAGCCCTGCGGTGGTCGCGCAGACACTGTAGACAGAGTCAAGAAAGTCGCAGTCATGTATCTTCAGAAGCCCCATGCCCTCAGACGCTGCTAAGCTGAGAATTGGCGTATACTTTCCCTGGAGAATGTTGAACACAATTCGGTGTTTGACGCCTCGCTTAGTGACTAGTAGCTTGCATTGGCCAAGAGCGGTTTCGCGTGCTCCTGTGTATGTTACAATGACGAGTTTAATTGGCCTCAGATTCGCCAGCGATCTGTCCCCTGTCGCCCTCACGTACTCATCGCGCGGCAGCACGCAACAATCAGCCCCACTGTCTATCTGGAACGGCACCGGCACGCCGTCGTCACCCAAGCCAAGTGTTATCATCGCCCGACGTCTAATGCCCACACTGTTCACTCTTAGTGTTCCAACACTGTACTCATCATCTGATGCTGACGTCTGCACTTGTCTTATGCTTTTATTGTGGCATTTGCTTTGAAAATGATAATTTTTTCCACACTTCCGGCACTCCTTGCCGTAGGCTGGGCAGCTTCTGGGACCGTGGTCGTACGGACAGTTCTTGCAAACCACCCTGCCTTCTCTATCTTTATGACCTTGATCGCGTCCGCGGAATCTGTTGGGCGCCTGCACGGTGCACACTGCCTGATCACCTGACATGGCGTGTGTCTGCACTACCGTTGCTTCAGCAGCTTGCACCATTTCATACGCTCGTTCGAGAGTCAGAGCATTCTCACGCAGTAGGCGTTCGCGCACTTTCGCATCGCGCAAACCGTGTACGAATCTGTCCCGAATGATTTGGCTGGTCGTTATGCCACCGAAATCGCAGCTGTCTGCAGCATGGCGTAGCTCTGTCATGTATTGCGCACCGGACTCTCCAGCCTCTTGGTTTCAGCATTGAAATTTGTACCTCTCAAATATGGTATTTTGTCGTGGGTTGCAGTGCCCTTCAAACTTCCGAACTGCGAAATTGATTCGGGACACTACAGGAACTAGACGACACCGACACCATGAGCAAAAACATCACTGAGATGATCCAACTAAGTGCGACAAGTGTAGCCAAAGCAATCAACGGGCATGTAGTGACGAGAATATCATCACCGACACGAGCACTAATGAAGAAACGACGAGAAATGGTTGATAACGGCGACCGTAACAAAAACAAATAGAATACTCAGAAATACGCAAGATCATCAAAAAGAAAGCGAAGGAGGACATCAGAAAGTACGAACAAGAGATCATACGAGAAACGATTATGTCATCAAAGAGCCTGAACAAAACAAGAAGAACACAGGCACTAGGCCGAGAGAGACTGATTACAACTCTAGACAAACAGGGTAGAGAAATACAAGACCAAGATATGATCATGGAACGAATAGAGGAATTCTACACCGAGCTATACGACAGTGAACAGAGTACCATAATTCACACCGACCCGAAAGAAGTACCAGAGATAACACCATGGGAGGTGAAAGCAGCGCTAAGAGATATGAAGAATGGGAAGACATAAGACAACGACCATGTAAACATTGAAACATTAAAAGCAGGAGAAGATATAATCTCGAAGACACTGGCAAAGCTGTATACTAAATGCTTATCAGAAAGATGAATACCCGCCGCTTGGAAGAACGCAAAGATGGTGATTATTTTCAAGAAGTGAAATAAGAAAGACTTAAAGAACTACAGACCGACATGTCTGTTATCAAACATCTACAAATTAGTCACAAAGATACTAACGAATAGGCTAGAGAAGACACGAGAGCAAGCAGGATTCAGAAGCAGGTACTCAACGACAGACCACATCCACGTCGTAAATCAACTGAAAGAGAAATACCGGGAATATAATATCGTGCTCTGCTTCGCTTTCGTCGTCTACGAGAAGGCTTTCGACTCGGTGCAAACTCAAGCAACACTGACCGCCCTTCAAGAACATGGGATAGAATATGTGTACATCGATCTCCTGAAAGACATCTACACTAACAGCTCGTGACAGTCCACCTACACAAAAAGAGCAACAAGATCAACATCAAGAGAGGAGTACGACAGGGTGACACCATATCGCCCAAGCTGTTCACGGCAACACTCGAAAGCATATTCCGAAGACTGACCTGGGAAACCAGAGGCTTGAGGATAGACGGAGAATATCTCAGCTATCTTCGCTTCACCGACGACATAATCATATACGCTACTTCACCGCAAGAACTACAAAACATGCTGCAGGAACTAGCTGATGAAAGTGGAAAAACAAGGTCTGAGGATGAACATCTCGAAGACAAAAGTGATGCTAGAAAATGACCCTCCAATAGATAGCAGATAGAGAACGTTGCAAGCTACGTCTGTCTGGAACAGCGATACAGTATCAGAGACAAAAACCAAGACAAAGAGATTCCAAGAAGGATCCCCGCCGTCTGGACAGCTTTCGCCAAACACCGGGACATCTTCAAGGGTAACTTTGGAACCTGCTTGAAGAGACAAGTCTTCAACTCATGCGTACTTCCAGCGATGACATACTGCGCGGAAACATGGGCACTCACCATCCAGGCAGAGAACAAGCTAGCAGCCGCACAATCAAATATGGAAAGAAGTATGTTAAACATCACATATCGGGAGAGAAAACAAACATCTGAGTAAGACAAAAGACAAAGGTCATAGACGTGATAGAACAAATCAGAATATTGAAGTGGACCTGGGCAGGGCACAATAGCAGACTACGAGATAACCGATGGACATCGCATATCACAACCTGGAGTCCGTACGAAGGAAAACGATCTAGAGGAAGACCAGCGAGACTGTGGAAAGACGAACTAGACGAGTACTGGAAGGACACCATCTGGCAGAGGATAGCGCAAGACAGGCAGATTTGAAAACGACATGCTGAGGCCTTCGCCCAACCACGGGACACTTCGGCTGCACAATGATGATGATGATGATGATATATATACGTGTATATATATATATATATACCTTTGGTCGTCTCCGTGTTTGCGGACCGTAGAATAATAATAAAGGTAATGCTTTACGCGTTACGCGCGCATTACGTTTTACAGTCCGAAAAATGGTTTTACCCTATAAAGGGGTAGAAAGCTTTAAGTATAAATATGGGGTACATTTTAAATAGAGGTGTTACGTCGAACCCATGTGACTTAGATTAATCCTAAAAGTTTGGCGCTCGAGGTTCATGCCGGAATTGCAAAATGGCGCCGGTGCATGGCGACACGTTGTGGCGGTGGATGATTGTGTGTACAAGCATGCATGTATGTTGACGCCACAACGCCAAGAATTCCTCGTACATTTGAAATGCTACTTGGTAATAAACAGTCTGAATCTGAATCTGAAAAAAGTCTAAGAGGAAAACGTTAACATGTCCCCATACATACATGCATGCATGCATGCATATATACATACATACATACATACATACATACATACATACATGCATGCATGCATGCATGCATGCATATATACATACATACATACATACATACATACATGCATACATACTTACATACATGCATGCATATATACATACATACATACATACATACATACATACATACATACATGCATGCATGCATGCATGCATGCATGCATATATACATACATACATACATACATGCATACATACATACATACTTACATACATGCATGCATGCATATATACATACATACATATATACATACATACATACATACTTACATATGTACATACGTACGTACGCACGCACGCACGCACGCACGCACGCATGAACGCATGCACACATACTCACATACACATATACACACTTACATACATACACAGACATATACATATATCAGCTCTATAATAGTAAGATATCCAGTGCTGTATTTCCAGGCGTAGTCAGCCAGGAGCCGGTGTTATTCGCGACGACCGTGGCTGAGAATATACGATATGGCCTGCAGGAAGCGACCCAGGCGGACATCGAGAGAGCGGCACAGAAGGCGAATGCGCACGACTTCATCATGAAACTGCCCAAGGTAGTCGATCGAGAACTATATCAGCGTGCAGAAAAACACTGATGACACAATTAATTTATGGAACGTATCACCAACTTCAAATTCACGTAATCTAGGTGTCATACACTACTCATTACAGAGTACCAACTAAATACACCAGACTTTATCTTATCGTCGGACGAGCAACATCGGAAATGCGTAGACCGTCTGTATTTAAATTCACAGAATAGAAGCATGACGTTTCTCCGGGATAGTTCATATTTTATTGCTCGCCAAAACCTACCAACTGCACCTCCTCGACTCCGTGTCACACTGTTAGTGCAGATTTCGTCTAGTTGCACACTACACCCTTAACTCTTTAACTTGACCTCTTGGTGCAGTTTACAACAGTACTTGTTGCAGACCATCGATGTTATCAACAGGAAATATCTGCTTTCGGACAGAAATACGACACATTGGTTGGAGAGCGCGGAGCACAGTTGAGCGGAGGACAGAAACAGCGAATCGCCATCGCTCGCGCTCTTGTCCGCGATCCGAGAATCCTCCTGCTCGATGAAGCAACATCTGCCCTCGACAGCGAAAGCGAGGCTGCTGTCCAAGCAGCACTCGACCAGGTACAATTAACAATATCATGGCATACATGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039421	Family	Type 1 protein exporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24221	ATP-BINDING CASSETTE SUB-FAMILY B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf6608_2.3 global RNA-seq network