Gene detail

Detailed information of PE_Scaf6092_0.13 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf6092_0.13	RHO FAMILY GTPASE	Superscaffold10	30050796	30054734	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf6092_0.13

AAGCCGGCTGGTCGTAAACCGCTTCAGCGAGCAGGTGTATTACATATAAGCTCGCAATACGTCCACGTTGATCATTGCATATAAACACTCGCATCGGTTCGGACGCCAGATCATTGATTGTCGATCAGACATACCGTCGATATTGGCGAATCTTCCCGTGATAGGTAACGACAGTTGAACGAGTTCGCAAACACATCAGCTGTCAGCGACAGTGAATCGAGTAAACACGTGCAGTGATATACGACAGCAGACGACAATTTCACTGACGATGGGTGTGCAGCGAAAACCGCTTATGGTGCCGCCGATGGTACGGAAGAAGCTCGTGGTGGTCGGGGACGGGGAGTGTGGCAAGACATGTCTCCTGCTCGTCTACAGTCGGGACGAATTCCCCGAACACTACGTGCCCACCATCTTCGAGAACTACATCGCTGAACTTCGGGTAAGCAATTGTAAACATGTCTTAATCATTACTGTTGACTTTTTGTTGTGTACTATAGTTTCGTTTCTTCACAATTTCTTGTGTGTGCATGCATGCGTTCGTTCGTGCGTGCGTGATGCTGTTGTATCGTGCATTCTAGAAATAGACCACAGCTGCAACAACGTCCTTGTTTTCGTGTCGCTGACGTCGCGACATGGTTATATAAACATCTGTTTACTGTCGTTCACTGGGCATTTACCCCACCACACCGCACATGGCAATGTAGTATTTACTCGACTGGCAGTCCCTTTCTCACAGACAGACAACCCCATGCATTTTAGCTTAAGCATATGTAGTCATGTGAAATAAAGCAACCCCGAGGCAAGGGTGCACACACAAAAATTGTTAACAACACCCCAGACTGGGTTATATATGATTGTTAGGGGGCAAGTGGGGGCATAGTGTGGTCATTATGAAGGGTGGGTCAGGAATGGCACGAGTGTACAACAAATAATATTTATAAAAATTCTCAATCCCAACTAAATATGTGGTCTCATGTATTCACCATCAACCTTAGATATACGCCACATACCACTATATACTCACGGGGAATCCCACGTTCTGTGACCGGCACTTGGGGAATTCCACACTGAATAATTGTACATGCATTGTTGCCAAGTTGACTGCACGTGACCTGTCAGGTGTAGCCAGGAGCCACCGTCCACTTGACACAGCCACGAGAAACCGAAAATAGTGACCGGGATCAGATAGGGCGGCACTTGATCACACACACTTACGAGGCACGCCGATTAGCCAAACCACTAGACATTACCGGGCAGCACATAGCAATGATTTTCTTAAGTCATACCAACGCTAAACACGGGTTGTTATTCATATTAAACAAGGCTGCAACATTTAGAATCATACAATACTATTTTACCTAGAAATTACCTAGATTATGTAGATTTTCTTCAGATCGTCAACGTGGAACTGTTGACGATCTGGGCTTTGAAAGGTTTTCATAATGTAAAGCAGGTAAGACATGAATGGTCCTATATAACACATAAAACACAGTTTTCTCTTTGGCATGTATGCGTTAAATCTAAGAACAGATTCCGCACATTGGCCATTCTTCAGATTTATTATACACTTGCACGTTACAAAATACAACACATCGGTTTATTATTTTCAAACAGCGCACACAACCTGTCGTGGCTGTTACGGGATGGGGGTTGACTCGACCCGCTTGAGTTGGTGCGCCTCGCATATCTCAGATGAAAGAAGATGTCTCACTCACAGCAAAAACACTAACAAAATATGTGTTCGCCACACGTCGACCTTGATAGTTCGTGGCATTTCCTGGGTGGGTGGTGACTGTCACGGCCCGGTGCAGAGTGGACAAGTGGTTGAGATATGAAGTCATCGCTGACTCACCGCGCGAGGTGCACACACGTGTGCCGCCAACCGTAGAAACAATGTTGGGTAGTCTTATCGGGCCGATCAATGGCGTGTGCTACGGATCAAGACAATCGCTGGTTTGTAATCTAGTAACGATAGATCAACAGCCGCTTAAGTGTCGCTGATTGAGTCGGCCGCTCGGTAAACAAAGGCAACGTAGAGTGTATCTCTCGCACGGACATTCCAATGGCGTGGATTCGACACCGAGCGTCACACGACACTGACGATCCTGACACGGACGCCCGAAACCATGAATAAATGTGGACGAGGTGTTGCCGCAGTCGACCAGGTGTCGGTATGACCCCACGCACATAAAACGCCAATGTTGACCTGACGGCTTTATTTATAATTGACAAGGGGTGCCTCCCTGTTACTAATTATGATTTCCTTTTTGGTCACAACAGGTGGCCGTACAGTGCGTGAGTGTGAATCGTGCGCTGTAGTTAGCGATGTGTGCGTGGAGGGCAGGGGTGGAGAAGTCACGATGCGGGTGGGGTTTGTTTCCGTCCACCGTGTGTCGGTGTTAGGAATGCTGGCTAGCATTTGCAGCGGTGGGGTGTCGCGGGGGTAGTCCGGGGGTGAAATATGACCCCGAAACGTTCACAATGTTCGTGTGCGGCTGATACGTGTTCACGCGGAGATAACGCGCACCGCAAAACCGCACGCTTCGATAGCCCAGAGACCTTGCACTAAACTAGGCATTGCATACAAGTCAAAGGGTTCTCGTTACGAATTGTGTCCGCATAAACGATGGACAAATGACAGTTAACTACACGACATGGACTACGTCAATGTATAAGATATCGTGTGATAAATGTTGTGTAATATGTTTTGACATTTAAGTAAGGCTTATGTATACGATTTGCACCAGTACCAGAAAACGTTACACATAGGATGAATTGGTGTAATATAATCTTAACCGTGTGGACTACACTCTGTAGTCTATGTTGATGTTTAATATATTGCTTGTGAAACACATTTAATGACTGTATATACAATGGTGTTTGTGTTGTGTTGTAGATGGACGGTCACTTGGTGGAGCTGGCGCTGTGGGACACGGCGGGTCAGGAGGACTACGACCGTCTGCGACCTCTCTCCTACCCCGACACCGACGTGCTGTTGCTGTGCTTCGCCGTCGACAACCCCGACAGCTTTCAGAACGTCACCGACAAATGGGTGCCGGAGCTGAACCACTTCTGCCCGAAGGTTCCGGTCGTATTGGTCGCCACGAAGACAGACCTGCGGTACAACAAGAAGGTTTGCCGTCACCTCGCTGAGGAACACATGAAGCCCGTGTCGCGACAACAAGGCCGCGACTTGGCGTGCAAGATCAACGCGTACGCGTACATCGAGTGCTCGGCGAAGACGCAAGAGGGCGTGCTGGAGGTGTTCGAGTTGGCCACCAGGGCGGCCATGACGAAGAAGACGCTAAGTAAGCGAGCTTCGTGTAGACTTCTATGAGAGGCTCGCAACGGGCGATGCCGCTCATTTGCTGCCGACAAAACGGACAGAAAAAGTATAGTGCTTTCTGACTTCCCACGCGGGAGACATTGCCTATGCTAATGCACAGTTTAGTTGGTCAGTATATGGAAAGGCGATCGCCGCAGTAGGAGAGAGGACAGTCATGCATCCATACCATGTATGGGTCACGTGGTTCGTACTTTGTGACAACTGACGGACAGTGCTGGACATTCGTCTGGAGTCATCAGAACCGCTATTTGTAAAATATAGTATTCACGCTGTCCCGGTTGTGTGTATACGCTTGTTGACGAGCTAACCGAATCAACCGTTTAATTCATTTCCAAGAGTGCCTTACGGTTATAGATGTCACACGGCGGACATCGGCCGTGATAATCCAAACATTAACCGAAACATTTGCAAGCTACTTGGTAACAAATGCTCTTCGGTGTCAGTATTTCCACCAAACCAAAACGATTACTGGGTAAATGTCGCCCACGATTTGTAAATAACTGTGTATTATTTATTGATTGAAAGTAATTATTTAATTAACTAGTCGATACTGCTGAAACGAATAAATTTCGTTTACCCATTCTTTAAAACCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR003578	Family	Small GTPase Rho	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf6092_0.13 global RNA-seq network