Gene detail

Detailed information of PE_Scaf604_3.3 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf604_3.3	HISTIDINE TRIAD HIT PROTEIN	Superscaffold12	8777293	8780630	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf604_3.3

ATGGTGAGGAGAAAATGCAGGTGCTCCCTCGCTGTGCTTTAATTTTGCGCCGGTTTTCCGCGATTGCTACCATCAAATATACACCGACAGTTCACAAATTGGTCGAAAAGAAAGATAATGTAAGACTCTTAAGTTCGAAATGTCATTCGTATCGTATGTTCTCCGTCTGCAACTAAGCTGAAATAACTGATTCGCTAGTCTAGGCTGGCTCGGCCGAGGCTCTACAGTACAGGCCACTCGTTCCTAGTCTAAAACGCTAAGCCTAAGGTCAACGATCTCACTACTGGCACTATTAATAAGCAGCCAACGTAGTCGTGAATTTTGTACACAAAAGTTTGTTTTTAAATAATCTAAGGAATAATAGTGCAATACTACCCAGGAAAACTACATTATTAACGAATTATTGAGGCATCATTTATGGTTTTTTAAGTGGTTTATTATAATTTTTGTTAAATTTTAGAAAAGTAATAATAAATTATTAAATATCAAATTTCTAACTTAGACTAAGTTGTTGTAAATAAGATTTAAAAAGAATCGAAATACAAACTTTTTTATAATAAATGTAGCAACTACCACGAATTCTCTGCAGCTAGGAGATGATCGAGATTAATCAATCTTTTCTCAGGATTAGAAAATGGCAAGAGTAGCCAAAGTTTTATTGTTTGTAATTTATGGACAAATGATGCAATTTTATGTCAAGCCACTGAGAGTAGTTTCAGGGCTAATTACGCTCGCAAGAGCCCAGCCCCTTAAAAGGAAGAAGAAGTAAAGTGCAGCTCAACGTACTTTGTCTGTTTCGTTACCTGTAATTAATCACCTTGTCAAGCTGAGGCACTGGTAGTACATGTAGTGCAAACAGGAAGTTTGAACACTGAATCAACTGTTCTTCATCAGTCTCTGGAGTGTAGGAAATACTAGGAATTAGACAACTTCAAAGGAACTTGCAGGTGCTGAAGCCTGACCCCGCAATAAGTGCCAATAGCTGTTTACAATTTGAATGTTTTATTTGCGGTTTGATTAACAGGCACAATTTAACTTTAAAATTGCAAACAATGTTTTGGGCTTATTACACACAAATTGGCAAGCAATACACCTTTAACATATTTATTCTAGTATTAATTAAAAACATATTACAAATTGAAGAAATGCTAAGGTAGGTTTAAAGTTGATTAAGATGCTTTGTAAAATCCTATTACATGCATTATGCTAGGCATTGTTCCATGTCATCACTGCCCCTGTGATTCTGTGAACGAGCCACCCTCCTCCCGGATGAGAGTGCTCCTACTTACAGAGTCATTCACAAAAAACTCACCTGAAGTTGTTGACTGTTATTTTGCAGTTGCTGGTGTCTGGCAATGTACGCAGTTACGCCTCTGATAAGTTTGATGAGGGTGAGAAAGCAAAGAGAGCTGCAGCCTTGAAAGACACAATCGGACAACCGACTGTCTTCAGCAAGATCATAGACAAGTCCATTCCAGCTGATATTGTCTATGAAGATGATTTGGTAGTATTTCCACTTTCCAGTTCATAATGTTATACTCAGACATCCATCTTAGTTCTTTGAATGAGCAAGTGTTTCATCTAACAAATTAACTGAGTAGAATATCATAAACGTGTTTTATGAATGTTTTCATGTAAAATGTTAAGTTGGTAACTATAGTATACTAGAAAGAAACTTCTGTCAGAAAGAAGATGTAGTTGAATTTATTTAAGGAGCAGTAATTGTTTGATTTCAGTGCCTGGCGTTCAAGGATGTGCAGCCAACTGCGCCAGTTCACATCATGGTGATACCAAAGAAAATTATTCCTGGAATCTCCTACGCAGAGCCCGATGATCAGCAGGTGACATGTCTTTGATTCATACCACTTTCTTTCCCATCATTTTCCTGTCTCTAAATCATTCCCTCCCACTCTCATTCACTCCATCCTTCTGTCGATCATTTCCTCCCCTTCTTTCTGTCCTTCTTTCCCTCCTCCCCTTTCCCCTTCCCTCCTATGTCCTCTCCATCCCTCTTATTCCCCTCCTCCTCCTTCATTGTTTCCCTTCTCTCCCCCCTGTCGTCCTTTCCTCCATATCTCTCCTCTCTCTCCATCATTTTTTATTTTTACCCTCTGCTCTCTACCCTCCAGTCCCTCTGCCCCAGTCTCTCTAGACTCCTATTCTCTCCCCCTCTTTCTTTCATTCTCTCTACCCCCGTTGATGACAAATTTTAACACTAGACAGGTTTTTGTTTAGGTTAAAAGTTTCTGTTATCGGTCTGATATGCATGCAAATTGGCACGGGAACAATGGGGCAAAGAGGGCAGCTTCCCCCTGGAATTTTGATAGGAGCAGACATGGTTCTGCCCTCCCCCCAGTAAAACTGAGCCTGAATGTGAGCGTTTTTGGCAAGCCCTCAAGAGGGGTGCAAATCGAGGTTTTCTGAGAGCCTCAAGGTGGTTTTTTTGGCGAGTGTCGGGGGCAGTGCAGTTGGGGGTTCCTAATTAACTTCCAAAGTTTTGACCGTCACCATGAAAAAAATATTCAACAGCTCCCCCCGCCACCCCGGCTATGTCATGATCGACAGTGGATTCCGGTTCTCACTGTAGTATGATGACATGGAAAACTTCTTTTATCATTTCAAAGGTTCTTGGTCATCTATTGTTGGTGGTGAAGAAAGTTGCAGAGCAACAGAATATCGACAAAGACGGCTACAGAGTTGGTACGCTATATTTAGATACCGAGTATAATTAACTAAAGGTTTTGGAATCTGTAACGTGTTATTATCGAGAGGCGCCCTCGTGCGAATAAGGTAACTTATAATGTTGACCTCTGGTGGTGCCATCTGGTGTACATGTATAGAGTATCTTATACGATGGTAATTTACGTTGTCATTGGCTGTAATCGTTACCATTAGTTTTATTACATACGCTTTTTATGCTGATCAAACATCTACCTTCCGTTTAAAATAACTTAGATTGTAATTGCCGGTACAAGACGACGATGGTACCACTTAGAATAGTTAATAATTGCCGTTTGGCGCTCTCTGTTGAATGTGTTAACGTAATCTTGGCAGTTTGTGCTGCCACCTGGTGAACATTTACAGTAATAATTGAAAGCGGAGCGTTGTTAGTTTGTTGTGCAGTACGCACGTTTTACCAGCGTTTAAGTAACTTATTTTGGTATACGGTGAACAGTATTGTTTTATTGTTATGTTTCAGTTATAAACAATGGAATGCACGGCTGCCAGTCCATTTATCACATGCACATCCACTTGATCGGTGGCCGCCAATTGACCTGGCCGGCAGGATAGACGTTTCAATTAAATTGTACTTAAATAAACTACGTATTAGCAGTTCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11969	DcpS_C	Scavenger mRNA decapping enzyme C-term binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001310	Family	Histidine triad (HIT) protein	Interproscan
IPR011146	Domain	HIT-like domain	Interproscan
IPR036265	Homologous_superfamily	HIT-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23089	HISTIDINE TRIAD HIT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf604_3.3 global RNA-seq network