Gene detail

Detailed information of PE_Scaf5972_1.3 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf5972_1.3	SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN	Superscaffold2	23423105	23432614	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf5972_1.3

TAATAACATGCGTTCGTTTTTTATTTATTTTATAAATGTGTGCGACCACCCGTAATACAAACGAAAATGTTGCGATAAGACATAAAAAATTGGGTTGCGCGTATGTGATGTCATTGTATCACTGTTTGGCGACAACTTCCAATCATGATGGCCGCGTCACCAAGTTTGGCCAGGCCTTGGAATCCAGATTATAAACATTCTGAGCGAGAAAGGTGAGTTTATAGTGAATGGTTAAGCTACTTTTACTCTGTATAATTGTAGTTATAAATCGGATGTTGCAGATATACGGATACCAAGTCCTACCTTTAGTAATGAACAACAATATGTTTCCCGTTCTGTTTTATCGCCCGATGACCATAGTCTAGCGACTGTGAAGTGTGATGTACGGTGTCGATGGATGTGTCACGGTAGTCCATGACCATATTATAATATAGGATATTTTTGGCATGATGTTGTTACAGCGTGATTCGATATTCATAGGCACTTGTGTAGAATCCGAGGTCCTTACCCCCTACCTGGGGGTAAGGACCAACCCTGGGGTTGAGTGCGCATGCGTCAGGTGCAGTCGTATCTTTTAGTGGTTCTTGTGTTTATCGTTAACATCACGAATTTTAAAAGCTTTTATAAATTCAAACTTACAGATGTTTAATAGCATCAATATTAGAACATAATCTTGTAATTACATTTCTGATCAAACCCCCCTAAACTACGTTTTGTCAAATTGGCTTGCTTGGCAACCGGTTCCGAATATGGATCAACATGGCGTGGATGTAAACAATAAGCACCAAAGGCGCGTGTAACTAAAATCCCCCCAAACAACTCGGATAACAGCGCATTTCTTCAAAACTTAATATAATATGAAATAAACAGATATTGAGTACATTAAACTACCTCCAATTATATACAACCTAGCTTAAAACATACATACACAGTTTTAGGTTAAAACACCATTTTGTTTATCATCCTACCCATCTAGCTTCCACCCTCTGAACTAACAGGCCAATCTTCGGGTGTATCATTGTCGGGACACTGACACCCCTGTGTTTTTCAAATACCCAGAGGTTCTGAGTCTGCCCAGAACCAAAAATAACATTACTATCTGACTATTTGTGTTGTTTGCACAAGCCCTCAAGCCCTGCACGTGCACATTATTTTCTTTATAATTCATGGTTTATATTTTTAGTTTATATTTACTGTATTTTTAACTCATATAAAGGCAAGTTTTTTACAAGCTAATATTTTTAAGTGCATTAAATTACAGCACTACAATAAAAAATGTTATACCTATTAAAAATCTACAGTTAGAACGCTCCATTTGCTTAGTGAGCATAAATATTATAAAATTTTCTCAACATGACAACTCTGTTACTGCTACTCGGAATTTTTGCCATACTCACAGCCCCAAACAAGAGTTACAGCTCCAATACAGGTGACAGGATGTCCAAATCAGAATATCCTAGTCTGCAAGTTGACACAACTCTGGCTTCCTTTCTCCGTAAACCTCAAATGACTGGTAATTCCCATATTGAGGAAGGGCCCAACAATACTACTAACGTCAGCAACACCTTAAATTTCAGCGAAAGTTTTGGCAAGTGGAGTATAGCTCTCTATATAATCTCTAAACAGAAATCCTGTTTCTGTCCCCAAATCCTGAAATTCAAAGCCAACCATTATCATCTGTTATTGATCATACTTCTCGCTGGCCAAATCGAAACAAACCCTGGACCAGTTAGTCTCCGTAGTTCTGAATCTTTATATCCTTGTGGAGTATGCAGATATGAAGTAAAGGAAGATGACGGAGCACTCCTGTGTGACAAATGTGAACTCTGGTACCGTGCCAAATGCATAGACACCCCCAAAATCGAATACAGCATCATGAAAAACATATCAAGCTTCTCATGGATCTGCTGCCAATGTGGTTTTCCAAATTTTGATTCGTCAATATCTCAAACCCAATCAGTCGCCACTACAAACCCCTTTTCACTGCTCTCTGAACTTGATGACACTAATGACAATGATTGTATAAATGATGCAGATAATATGCACCCAAAAACCTCAACTCCATCCAAAGGTTCGTCTGGTACTCGTAACACACCTACCATCAAAAACAAAAAACATGGTCTCAGGGCAATGACCATAAACTGTAACAGTATAAAAAGCGCGACTAAACAAGCAGCCTTCCGTGCAACAATCAATCAACACCAACCAGAACTCATATTGGGTTGTGAATCCAAATTAGATAGCGATATGGCTACATATGAACTATTCCCAGAAAACTACACTGTCTACCGCAAAGATCGCAATGCAAATGGAGGAGGAGTCTTTATTGCCACCAAAGACTGCCTCATTACCTCTGATGAACCTGAATTAGGCGAAAACTGCGAAATTATCTGGGCAAGCGTGCAATTCTGAGACTCTAAACCGCTATATCTGGCCAGTTATTATAGACCACCAGGCAACAAAACTCAGTCACTATACGCCCTAATCTCATCAGTAGCCAAGACTATCAATAAAAAACCACGCCAGCACCCTAACTTAATAATTGGAGGAGACTTAAATCTACCAGATATGAACTGGACCGACTGGTTGACAACAAATACTAACACTAAAGCAATGCACGAGAAATTCATCGACTTCTTACTTGATAACTCGCTTTCTCAACTAGTTACCAGCACCACAAGACCTGTCTCAAATTGGTTACATCAAACCCTAATCTCATAGACAACATACAGGTGCTTCCAGGCATTTCTGATCACTGTATTGTACTGTTTTATATCAATATGAAACCTAAGTTACAAAAGAAACCACAAAGAAAGATATACCTCTATGACAGAATTGACCCCAAAACACTGCAAACCAAAGTGCATGATTTCGTCAACAACTTCTTAGCCTCAAACCCTGAAGAACAATCAGTCAACACAAACTGGGAAACAATTAGAAATGGACTGGACAAAATTGTGGATGACAATGTTCCATCAAAACTCACTAAAGGAAAACAAAATCTACCTACAAAATCTGAGAAAATTTGATAAATTGTTCTCAAAAGCCCATAAAACAAACACCCCATCAGATTGGAAAGCCTATCGTGAATATCGCAACTATGTTACAAAATGTACCCGCTCAGCACACCACGATTATGTCAACAACATAATTGGCAAGAATATGACTGAAAACCCAAAATCTTTCTGGTCATACGTAAAACTCACTCGCACAGAAAACCTAGGAATCCCAACACTTAAAACTTCTGATAAAATGTGCAGCACAGATCACGATAAGGCGGAGGCATTGAACATGCATTTCCAAAGTGTATTTAATAAGCAGACACATACACAAACGCACAGTAAAGGTCCATCTCCATATACCTCCATTCCTCACTTACACATCACAACTGCCGGCATAGCCAAACAATTATCTAGCCTAAGCCCATCAAAAGCATGTGGTCCTGATGAAATGTCACCTCGTTTCCTTGAAATTGTTGCAAATGAACTAGCTCCGGCTCTTAGATGTATATTCCAGCAATCCTATAACCAAGCAACAGCCCCAAAACAGTGGCGCAAAGCACTAGTTACAGCAATTCATAAGAGCGGTCCAAAATCAGACGCCTCCAACTACTGACCCATATCCTTGACCTGCTTGTGCTGTAAAATCATGGAACACATAATCCTAAGTCATGTCGCCAAACATCTTAACACTCATAACATCCTTATTAATGAACAACATGGATTCAGGAACTGCCTCTCAACTACAACACAACTCATAAACTCAACTAATGACTGGTCAGAAACACTAAATAAAAAAAGTCAGACTGATGTAATCTTACTAGACTTCAGTAAAGCGTTTGATAAAGTTGCTCATCACCACCTATCAGATAAATTAAACTACTACGGCATCCGAAATAACACTCTTGGCTGGATCAATAGCTTCTTATCCCACCGTATACAATCTGTTTCAGTCAATGGCACACATTCTTCCTGAGCTAATGTCACTTCCGGAGTTCCCCAGGGATCTGTCCTGGGGCCGGTCCTATTCCTTCTATGCATAAACGACATCAAGGAACAAATAAATTCAACAATTAAACTCTTTGCAGACGACAGCATCCTATACAGAGAAATAAATAACACAAACGATCAACATATATTACAAAACGATTTAGAAACCCTCACAACGTGGACTAAGAAGTGGTCAATGAATTTCAATGTTAAGAAATGTGCAGTTCTCACCATCACACGCAAACGAAACCCCAAACTATATCAATATACATTACTGGGAAAATCACTAAACCATGTTCAAAAGCACGACTACCTTGGAGTCACAATATCACATGACCTAAGATGGAATGATCACTTCACCAAAATAACCACCAAAGCCAGCCCCACACTTGGACTCTTAAGAAGAACACTGTCACCTTGCTCACAAAATGTCAAAGAAACAGCTTATCAAACCCTTGTCCGACCACAAGTTGAATATGCCAGCGAAGTCTGGAATCCCAACACAGAAATTAACCGCATAGAACAAATCCAAAGAAATGCAGCAAGATTTATCTTCTCCAACTACCGAAAGGATACACATATTAAACCACTCATAAACAAACTCAACTGGGACTCGCTCCACACACGTCGCCTCATTCAACAAACATCAATGTTTTACAAAATCCACTACCATATGATCAACATCAGTCCTCCGCCATGTTTCCAGCATGCCACACATATCTCCAACAGAATCGACCAACCACTTAAATGTACCAACACAATAATTCCAACCATCAATGCATATAAATATGCATTCTACCCCAGAGCAGTATCCATATGGAACAGACTCCCACCATCTGCTGTTCTACACATCACGCCATCACTGCCAGCCTTCCTGTGTGTCGCCATGCCAGCCATCAGGGAAATGCAACCCTTGCATGGCGTCCACATCCTTTAAAGCTACAAACTTATGTATATAGTGCACCACTTGTTCTTATCCGCGCTTTTGTTGGTTTTTGTTGGTTTTCATTGTTTTTCTTTCTTCAATTTGAACAATCTTCTACACGATTTTTTCCCTTTTTGTTCGACTGCCCTGACGTTATGCACCGCTCAAATCCCAGTTTAGCTGTGAACAGCTGTAAAGGGATTACTACATCAAGCATCAAGCAACCTGTGCTCAATTTCGCCATTAATACATTATGTAATAACTTTTGAGGCTCATATATCACACGGTTGAAATGAGTGCTAACAGCACATGTTGATGAAAACTGTGTAAATGAATTGTGACTGCTTCTTTGTAATTTATATCTCTTTATTTCGAGAAGGGCATAGCACCCTCGATCATAAGTCACACGATTTCACCTATGTCCCTTCAACAGCAGCAGAAGTACACCATACTGTGCAATTGTATTATGTTGTTGAATAAACTTTTCATTCATTCATACTATTTAGGCTTCAAATGCGTGGTAACTTAAAAAACTGCTAAGAAGTAATATTTTTATCATGTAAATATGCCCGAGATGATATGGAATGATGGAATTAACAAACAGATCTAAAATTTAGACAAAAATATAAATAGCTTTTCACCTAATGGAAAGGAAGTATATATAGTGACCTTTTTGCTCATCTGGGCAAGTAGAATTTACACAAGCACAATCAATGTAGCACCTGCCCGATTAAACAACAGCATTACTGAAGTGTTTTATTGTTGTTTATTATAATGCCGTCAACGACTATGTAGATTTGCATAATTGAATAATGCTAATTAAGCCACTGCATGGCATTCCACTTGCCTTGCAGTTAACTGGCCATTTTTCTGGTCTGTTTTTAGCGGCATTACAAACATGTAGATTGCAAATGGACATTTGACGTCCCTTTCAACTTTCGTTTTCTGGACACTATCATGCCCCTGATGAATAAATGACCTAAGACTAGTACTTATAGATCTTATCTGCTAAAAGCAGACCAGCAACACGGCCAGTTAACTGCAAGACAAGTGGAATGTTGACAAGCATAATTTAAAGCAGCATTGAATAAATGTGAACATGGGCAAATGGGATGAGGCACACAATACAATGTTCACAAGGGCATTATCTTGTAAAACATACAGAATCTGTTAGGACTTATCAAATACTTGAGACAGCTTATCTTCACTGAACATCAGAATGTCATGATCAGTTGCTCGATGGGCAAGTGGTAAACAAATCTTTTAAATGTCAAGATTGACATATGTTTTGATGTTACCATCATGTCATTGGATATACTGTTTCTTACAATTAGGTGGATCTGTGTCTACCCAGCCTACATCAATAGCAAGAAGACCATCGCACAAGGTCGCGTTATACCAAAATCAAAGGTACGGACCACAGCTGTTTCATCTAGATAACATAATTGTGTAAAGGTAGTATAGGCTTGGGCACACATTTTTCAGTGAAATTGACTGTACTCAGGACCTTGCTATTACATGCAATGAAATAAAAAATTTACCAATAAAAACGCCAATATGTCGTCTGTTCGTGTGTGAAATGTTGTTGTGATAACTAAAAAACTATGAGCTTCTAAAACAATCCATGATCTACAACATGCTGCCAAGATCGACGACCACATAATTCAGTTAATTTTGATACAAAGGTATTTTGGTTGTTCCTTTTGCTATGTTACCAAATAATATTGAAATGTACAATAATATATTTTAAAACGAATATCCAAATTTACAAAGAAGCAGTGCTTGTGTTAAATATGCGATTACAGATAGTTTAATTTAATATTATTTTATAAATAAACATAATTGTATTTGTACAAAGTAAGCTGTATCTGTTACACAAGTTGACTCTAATAAATGTACATTACAAATTACAACATTATTATGTTAATGGATGTTCTGATTTCAGATCCACTCTAGTACAAGAAGTTTTAGTTTTGAAATTTTTCTCTGACTCCAGGCAATCAGGGAAAGGAAAACCAGTCACAAAAAGTCAGATAAAAACCAAACAACATGACATAGCTTAATGAAACTTGTTTTATTGTCCACATATCAAATTTATCTCCCTTTTTTTTTATTTGCCTAATTAATATATTTTGTGCTTGTCTCTTGCCAGGTGCCAAACTGCCAAAACAATACATTTCACCATTTTCAAAATAAGATATCTTGAATCCATCTAATATTTGGTAGACTTATAGTATATGTTAATGTCCTTGTACATGTGTAATATTATTAGATTGAAGTCATTAATTAAAAAGTTGTATTATGTCAAAAATAACATTTTTATAATAACATCCGTGTCCGACCCTAGATAATAATTGCAAAACTAAATTCTCAAAACAGTACATATCTGTACTAGTTAACGCAAATTTGGTGATTAAAAAAAATTATTCTGATATTATTATTAATCTATTATAATTTATTCATAGGTTACATCTTTCACTGTATGAGAAGAGTCTTGACATAAAACAATTTTTAATGTATACCATGTGGGACATGATTCATGCATCATGACAACAGTTATTTTTCTGACATCATCATTATGATTATTGACAGAAATTATTATGGTTGTGAACTGGTGTTACAGTATTGTGAAATGCAACGGGTTTATCTGCAGGCTGTAGACAATCCCACATATGCAGAGATCAAGGATGTGTGTTCAGCAACTGGTCTCAATCTAGGTGTAGAGGTGAGTGTGAAATCGTATTGAATGTACCTAGTCAGTTTATTAAATTCAACAAGTGCATGACATTTTAGAAATGCAAGTTCTTATATAACATAGTGGCCATGTTCATATTCCTGCTCAAACTGTTTTACACTTGAACCCCTCGGACGATCTGCCCATTCCAGTACCAACTTGACTTCCTCGAGAAGCATTCTGCCATACTGCTATTACTGTGTGAAGATTATTCGTTCACCAGACCAGTAGCTATATACTTATTTATACATCTGAGTGAAAAAAAATTTATTGAAATGACAGGCTCAGCAAAAGGATTTGAACCTGGGTTCTCTTGATTCAGAGTCCATTGTTACGTTGCTACCTCGCCTGATATTCAAACTTTTGTCATACAGTACGCTACTACTTCACTACACCTGTATTATTGTTTAGCAGGTATATCTTGTAAAATGTTGGCGGCGCCATTTAGTGCCCACACATCCATACTTATACCTGTGTTTGTTCATTTGTTAACCTAAGAAAGGCCTTTTACAGAATAAAGCTCACCCAAGAGAGTTGGATCCACGTGACATGCGATTTCGAGGACGCATTCGAGTCCACCTAAAGAATGACGATGGCACACCCGTAAAAGAACAGTTTCCCAGTCGTAAGTAATTCACGTGTGCATTTTATTATCATCATAGTGATCGAGTTGTTGGTATATGCTAGACTCAACATGCCAACATAAGAGTTATAGTGTTAGTGTTAGTTATAGCAATTAACTCATTAGATTACCATTCTGTCCAAAGCAGAAGGAAGGAAGTGTGTAGTTCATAAACATTCCCTTCTGTGATGTAATATTTGCATGAGTTCCTAAGAAAACGCAGCTCTTTATATCACTCAACAAGTTAATTTCGTTTTAAACAATACCTGGTAGTACATGTTCGGGTCAAAATTGTTTGTATAAAACTGTGGATAAATAGTGGCAGTTAACATGCTCAATGCACACTTATAGTCTGTCTACCTATATTTTTGCGTTTTGTTTATTGCATTGTTTCAAATGGCACACAAGACAACCATGCTCTACGTTGGTAGTATTTCATGAGACCATATTTAACAGGTTAAACATGGGGCAGTTTTAATCAAGCACTGTATTCCCATTATTCTGTCAATGTGCATGACTTATGATGTGCATAAATGCCTAAAGTACCAAGACATCAAACACATACTAAGTGTAAACACACAGTAAGAGTAAACACACAGTAAGCGACTTCTATCTTTGTCTGCAGGGAGGTCGCTGTTGCTGTACCTTGGAGAGATGATCCCAAAGCTGAAGACTCGGCAGCAGAGCCAGAGCAGTGCCCAGGCCTCGAGCCAGCAGCAAAGTGTCGGCAACAAGAAGAAGAAGGGCAAGAAACGATAGACGAGTTACCAAGAGGCTGTTATATCTTTGGTAACGAGAGGTGGGCTGGTAATAGGAAGGTGAAAGAAGTCCTGCTGGACAGATGAACATTTGTAAAAGTTCTTGTTATAGACAAAATCACAGGTCTGAGAATGCTACTGGTGTTCTTCTCAATGATTTGGCTAAATGTATCTGAAGGAATATTAAAAGGTATCTGCTATATATAAGTTCTGAGCGCTGCACTGGCACAGGTATACATTACATATAATCTCAACCAATTGTATAAAAGCCAACCATAAAAATTACTGTATTGAACTATTATTGACCGACTCAGAGGAAGTTATTTAATACAATGTTGTGGCAAAATATGTAACTCATTACTTCTCTTCAACCATGTGTTACTTGCATACGTACCAGTCGTTTGCATTGCCGTGATGTGCTAGCCAAGCCTCTCACCGATAGTTGTACATCTGTTATAATTAAATCGTTTAATGTATTACGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01922	SRP19	SRP19 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002778	Family	Signal recognition particle, SRP19 subunit	Interproscan
IPR036521	Homologous_superfamily	Signal recognition particle, subunit SRP19-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17453	SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005786	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0006614	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0006617	Biological Process	SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	Interproscan
GO:0008312	Molecular Function	7S RNA binding	Interproscan
GO:0048500	Cellular Component	signal recognition particle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf5972_1.3 global RNA-seq network