Gene detail

Detailed information of PE_Scaf5907_15.13 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf5907_15.13	UNCHARACTERIZED	Superscaffold3	12475323	12483301	-

Gene Structure

More details in Jbrowse Sequence

CDS

PE_Scaf5907_15.13

ATGCCGGGTGGAGGCAGGCCATTTAAAGATGACCCGACGTCCTACAAACGAACGGGGATTCCATGTGGCAACCCTCAGAGGTACCAGAGTCGAGGTGTCATCAGAATGGCGCCGGACGGAACACCTTTCCGTGACCAACGCACTGAGACGCCCATCGAAGACATTGAGACAGAGGGAGAGAGGCAACTGAAAGAACTACTCAAGAAGCAACTAGACACAAAAGTCACACTGCACGGACAACTGAAAACAAAAGAGTTCACCAGGGGAGCCGTGTTCAAGCCACTGCAGGCTGAGGTCGAAGGTCAGATGACTTTGGGCGACTACCAGGGTGTTGTCAGTCATGACCGCCAGGTGGAAGAGTTACGATTGGTCGGACTGACAGACGAGGAGATTCAACTGAAGTTGTCTCATGACAATGATTTCTCTAGTGCAACATCGGCCAAACGAAAAAGATACGGTGTCGACTCAACAGTCTACAAATCCAGATTGGAAGAAATTGACAGAAAAATCAACGCAAAACTAGCCGAGCTTGCAAAGCCAGACACATTCTCTGGTGTGAAAGAGTTAAGTAGACAGGAGATGGACTTGGAACGTGCTATAGCAAATGACCGCAATAAATCAAAGCTACTCGGGTGTCTATTAACCAAGCGAAAGCCAAACACAACCGTTAGTGACCCGAACCATCCCATAAACCACCTGGATGACATAGTACAGGAAGTGGTGAGCAGAAAGAGAAAAGGGGAAAATAGTACAGCAGTTCGACGTGAAGTTGATGAAAATGACAGCAATTCTGCAGATGATCTTGCAGAGGTGGCAACTTGTGCCGAAAAGAAAGACAGTGATGATGATTCAACAGGGAATGTCTCTAACTGTGAAGAAAAGAAAGACAGTGATGATGATCCAACAGAGAATGTCTCTAACTGTGAAGAAAAGAAAGACAGTGTCTTAGACTGCTACAAGTCAAACCCGTGGGTGGTTGTGGAGTCTGTCTCTGACCGCATGGAGGCCATTTCATCTTTGTTGAATCCGCAGAAAGTCACGGCGTCTGAGGGCTCGCAGAAGGTGGTTGTGTTTATTCCTGTGGAAGAGATCGAGAGAATGAGACTGAATCCAAAGGAAATCAAGACAATGCCTAAATTCAAGAACTACGAACCAGGAGAACCAAGCAAGACTCTCTACGTAAAGAACTTGTCGCCGCGAGTGAGCGAGTCAGATTTGTTGTCTCTCTTCATTCGCTTCCAAATACCTTCCAAGCCAAAGATCATCTTCAAGTTGATGACAGGAAGAATGAAGGGACAAGCCTTCATCACGTTCCCTGACCCCGACACAGCAGCGGATGCTTTGCAACTGGTCCACGGTTACCAGCTGAAGGGCAGGCCCATGGTGGTACAGTTTGGGAAGAAAACTACAGACACAACTGAAGCTGACGTAGAAGCTGGGCACAGTAACATCAGCTCCAGATCTAACATCCCGCCCACGATCTCCTACAAATCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACAATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCACCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCATGATCTCCTACAAACTAAGTCACATTGTAGGCTCCAGATCCAACATCTCACCCACGATCACATACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTTACAGTGTAGGCTCCAGATCCAACATCCCACCCACGATCACCTACAAACCAAGTCACATTGTAGGCTTCAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCGCCCACGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCGCCCATGATCTCCTACAAACTAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCACCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCACCTACAAACCAAGTCACATTGTAGGCTCTAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTCATATTGTAGGCTCCAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCACCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATTCCACCCACGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCATGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATTCAACATCCCATCCACGATCACCTACAAACCAAGTCACACTGTAGGCTCCAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTTACAGTGTAGGCTCCAGATCCAACATCCAACCCATGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCTCCTATAAACCAAGTCACATTGTAGACTCCAGATTCAACATCCCACCCACGATCTCCTACAGACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACAATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCACCTACAGACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACAATCTCCTACAAAACAAGTCACATTGTAGGCTCCATATCCAACATTCCAGGCTCCAAATCCAAAATCTCACCTCCAATTTACAAACCAAGTCGCATTGTAGGCTACAAATCCAAAATTGCATAA

Transcript

PE_Scaf5907_15.13

GATCTGCCAGGGGTGAACTGTAAAGCACTTTGAGCAGTCCTGAAGATGGATATATTAAGGCAAGTTTCTATTAAAACCGAATGGTCATTTTGCGCGTATTATATCATGCTATTGCCCGACTCGCTGTTAGAATTAATTTCAATGAGAAAAGCAATAGTAGTCTGTACCCTTACTCTAAATTAGTTTTGCCTAGCTCCACAGACGGCGCTGCTATAATCACCGTGTTTTAATTCTAACGAAGCCCGCCAGGTGACGAAGTTTTGTTTAATTTTAAGAGAAGTCTTTAATCGGATAGACGCAAACACTTTGATAATGCCGGGTGGAGGCAGGCCATTTAAAGATGACCCGACGTCCTACAAACGAACGGGGATTCCATGGTAAGTGGGAACAGCAGAGTTAATTGAACTACACAAACCTTACGGGCGATAACATGTGCTTTGAATGTGTCTTAGTTTTTCAGGAGGAATTGGGACATAATAATATGATATACTCCATTTGTAGCGCAACACCGGTCAGTTGGTAGTCAAATAAACTTGACAGTGACAGCCACTGTTCAGTTCACTTGCTGACAGTGACGATCACTGTTCCGTGTTGTTGCGTGGCTAGCCTACAGCCTACGGCTACGCCTACAAATTCCAAGACCAGGTCCAAGGCGATAAGCTACAGTGTCAGTGGCAGTGCACTGTCCTTGAGTTTGGCTTTATTTTAAATGTGTAGTTTTGACAAAACAAATGACATGCTGACATTAGAACTCTTAAATTCCTTGATGTTGGGATGATTCAATTTGTCGATAACTGTTCTAGTGTAACAGAATAAACGGGTCAAATAAACTAAAAGTGACAAGAAAAGTACAGGATTTGTCAGAAACATCTGTCTGTGATTCTTGGTCATGTCTCATTGTTTTTCTTTCAAGTTTAAAAGACTCGTCAACTGTTTGCAGTGGCAACCCTCAGAGGTACCAGAGTCGAGGTGTCATCAGAATGGCGCCGGACGGAACACCTTTCCGTGACCAACGCACTGAGACGCCCATCGAAGACATTGAGACAGAGGGAGAGAGGCAACTGAAAGAACTACTCAAGAAGCAACTAGACACAAAAGTCACACTGCACGGGTGACCATATTCATTCTTTTTAGCGTACAGTATGCTTTAAAAAAATGTTAAGCTTACAACAATTCTATTTCTCAAACCAGTGTGAAAATGACAAAATGGTAGTGCCATTGGGTGGAAACGATGTATATTTTTTACTGTCTCTACTGTACTCTGCTATGTGGCGCCACTACATTGTTCATTTCCATTTTTAAAATAAACATGGCGCCATTGACACACATGTTACTCTGAATTAGAAAACAATTTTTAATTGTTTTTATCAGTTATTTATGGTTACCACATATTTCAAACTATTTCTCGTTGGAGAGATAAGTTAACAGTGGACAGCAGAAGACAAATGATCTGCATGACAGTGGTGCTAAGACACGGACAAAGTCAGAGAGCAGGCCATGTCATCCTCAACATACATTCAACTTTCAAGATTAATTCAGCCGGGATGAGACACGTCAACGTAACTGAAGCTAACTGGAAATAATTTATACATCCATGTGATGGTGATTTTGTGGTCAAACGGATACTGAAACTTTGCAATGGCTGTGGATGCAGGTGGAACTTTCTTTCTGATATTGTCAATGGTTGACAGGGAATTACAATAAATGGTGGATCCAGTGATCAGTTTTAGTCACAAAACGACATCAGACCTCTACTGGAAAACGGGGTGTATGCTAATTAGGGCATGTACACTAAACAGATTGAATACCGTTAATACATATTTTAATAGAGGTGTGTTGTGGAATTTATTACAGATATATATATATATATATATATATTCTTACTTGAAATTAAATAATGTCACATCTATGTGGGATATTTGGCTGAATCTGGATGTATGTATGTTGGATATGCATATTTTATTTATGCTTAATAAATTTATACAACATTGATGTTTTTAATTTGTGACTTAGGGATAGATGTTAGGTATCCCATATTTGGCAGAATAGCAGCATGAATGGTTTGTTATTTGTAGGCCTATTTAAAAAATAAAATTATATATGTATATATATATATTATAGTTATGTATTAATTAAACACTGACAGAGCTGACATTTTTATTGTTTGCCATTCTGACATGCACGTTTGTAATGATTATCCATATTATTAATAATGATTGCAGACAACTGAAAACAAAAGAGTTCACCAGGGGAGCCGTGTTCAAGCCACTGCAGGCTGAGGTCGAAGGTCAGATGACTTTGGGCGACTACCAGGGTGTTGTCAGTCATGACCGCCAGGTGGAAGAGTTACGATTGGTCGGACTGACAGACGAGGAGATTCAACTGAAGTTGTCTCATGACAATGATTTCTCTAGTGCAACAGTAGGTGATGATTTCTGTTATCATCGCATATAAACTCTGTATTGTTTGTCGCCTTTTCTGTAATTACTTTTTCTGTATATGTCATCAAATCACCATTATATGGTGGACAGCTACCATCATTTAGCAGATGTTTATTTTCACCAGATGTTTATTTACACATAAAAAAATTATAAATGTTATGTTTCAGAAATTAAATAATAAATTATAACCATGTACATACTACATAGTCACCTTGAGTAATCTACGAACTACCAAGTTATCACTTCTGGTGGATGGTATTTTTGTTAGTACAACTAATTCAGCAATTCTGCTGGTATGGTCATGCCTCAGCCAATCATGGACCTGACATAGCATTTGCACAGAATGCATTTTTGTGTTGTGGTGTCTTGGGGAGAAAAAAACAAAACAATTATCTTGTTAAAAGTACATTTTGCAGTGATATTGAGTTGGTCCAAATGATTAAATAGTATGTCAGTAATTGGTTTTCTAGCAGCACATAAACATACGACCTCTTCTCTCCACAGTCGGCCAAACGAAAAAGATACGGTGTCGACTCAACAGTCTACAAATCCAGATTGGAAGAAATTGACAGAAAAATCAACGCAAAACTAGCCGAGCTTGCAAAGCCAGACACATTCTCTGGTGTGAAAGAGTTAAGTAGACAGGAGATGGACTTGGAACGTGCTATAGCAAATGACCGCAATAAATCAAAGCTACTCGGGTGTCTATTAACCAAGCGAAAGCCAAACACAACCGTTAGTGACCCGAACCATCCCATAAACCACCTGGATGACATAGTACAGGAAGTGGTGAGCAGAAAGAGAAAAGGGGAAAATAGTACAGCAGTTCGACGTGAAGTTGATGAAAATGACAGCAATTCTGCAGATGATCTTGCAGAGGTGGCAACTTGTGCCGAAAAGAAAGACAGTGATGATGATTCAACAGGGAATGTCTCTAACTGTGAAGAAAAGAAAGACAGTGATGATGATCCAACAGAGAATGTCTCTAACTGTGAAGAAAAGAAAGACAGTGTCTTAGACTGCTACAAGTCAAACCCGTGGGTGGTTGTGGAGTCTGTCTCTGACCGCATGGAGGCCATTTCATCTTTGTTGAATCCGCAGAAAGTCACGGCGTCTGAGGGCTCGCAGAAGGTGGTTGTGTTTATTCCTGTGGAAGAGATCGAGAGAATGAGACTGAATCCAAAGGAAATCAAGACAATGCCTAAATTCAAGAACTACGAACCAGGAGAACCAAGCAAGGTATGGTTCTGTTTAAAAATACTGTTTAAATGTTGAGTCAGAGTAGTTATCAAGTTCCTGTCTTTACTGGAAAGTAGATAAAAGTTAAGGCAACATTTCGTTATCATTTAATTAATTTTCAATAACGGGTAATCTGTCATCTCTGCATCATTGTGAAAACAAAATTTAAATGTTATACATTTCAATTTAAATAAACTGTCAAATTGTCGACTTCTTTCTGCTGTTTTTGTCAGTGTAAAAATGTGCTAGGAAGAAGATCAGGTTTCAAATGCACTTCCTGCTATTTCAGAGATGACAGTTTTCTATAACTACCCATTGTTTCGGTTTAGCTGATTTATACAAATGAGCATAAATATATTTGTTTGTGTATACGTAAAATACTAATTGTACATATAAACTTTTAGAACTTTCTGAGCTCCTAAAAACTGGATATCCAAAATTGTCATGGTATATAAGAACACGACCTTTTATGAAGAAGTAAAAAACATGGCACGGTGGTTGTCAGTGTTTAGAATAAAGAAGCACCACGAAGCACCGACCTGCCGGGGGTAATGTGATTAATGCAGTTTGTTTTGTTGCTGTTTAGTTATCGCTAGTGCAGCTTCACTGTGTTGTTTCTGCAAGTCTTTATCATCCCCGCAGACTCTCTACGTAAAGAACTTGTCGCCGCGAGTGAGCGAGTCAGATTTGTTGTCTCTCTTCATTCGCTTCCAAATACCTTCCAAGCCAAAGATCATCTTCAAGTTGATGACAGGAAGAATGAAGGGACAAGCCTTCATCACGTTCCCTGGTACTGTACACTGAATGTCATGTAAATATACCTTTTGCAGGGTTCGTACGGGATGAACGTCCTTAATAGCAATTTATTAGTTAAAAATCTAGGCCTTGGCATGGAAAAGCCTGGATTTCTACGTTTTCAGAAGTAAAATAGCAGACACCCAAAACATTGAGTTCTCCATCTATGGAAACCATGAGTGACGAAGCACTCTCTTTCAGAAAGTGTTACTCTGGGAACACATTTTTTTTAAAGATCAAATACTATAATGATGATATATAACTGCTGCCTTTGGCGTGTGTCACAGGTGTAAGCTAGCACAGGTATATTATAACTAAGCTTAAATGTATGTTTTGTATAACTACCATGCTCAAATGTAAGTCATGCATGGGTTTTAAGGCATGGAAAAGCATAGGAATAGCATAGGAATTGTACAACTGCCTACATATACGAGTGCTGTTATGGGATTCACTCATCAACTCTTCCTCTTGTTCCAGTTGTAATACAGAGTATTTGTTCTGTTTCAATCTGTCAATTTCATGCATTGCAAATGTTAAGAATTCTTTTGTTTTTTAAATCATCAAAGTTAATAAAGAACTGTCTATACCATGTGATTACTGTATAGCTCTGTCAGAAGAATTCTTCCCCAAAATAAGGGCACATCGGATAAATTGAATAGTTAAAAAAATTATATTGTACAGTTTTCATTGAATTAATCTCATCTTCTTGTATTGGATCTATTGATTTGTCATGATTTTATACAGTAACCAAATATCTTTTTTAATATTGCCAATAAGATCAAGTTGTCAAATACAATTATATGGGGTAAAAATTATGCTTTTTTCCAGAATGAAAGTCATCACTTAACATGGTATTTATAATCACAAGAAATATAGAATGTATATTTTGCAGACCCCGACACAGCAGCGGATGCTTTGCAACTGGTCCACGGTTACCAGCTGAAGGGCAGGCCCATGGTGGTACAGTTTGGGAAGAAAACTACAGACACAACTGAAGCTGACGTAGAAGCTGGGCACAGTAACATCAGTACTTGTGTAAAGGCATAGTGGTGGCGTTATGTACAGTATATTTATTTATTAAAACATTCTACATGAATCCTGTGTTGACACTGTTGAATATTGTCAATCGATGAGCTGCCCTGATTTTGTTTGGTAAATTCTTTAAACGGAATGAACAACGATTTTGATTGGTTAACAGATGTGTAGCAAGTTAGGTGTTATTGTGCTATTAAAATGCAATACTCTGACTTGTTTAAAAAACCAAAATACTCTTAACTTGTTTTGTCCCAAGGCTATATTTCATGTTCAAGATGACTAAATCATGCAGTGAAAAATGCATGTATGGGTAAAGTACAAGTCATTATTTCACTGGTGTAAATTGGTCATAGCTGTTACCTATTATAATCCATTGCCAAATAATGTATTGTCTAAAATATTTTTAGAGGCGAAAGAACGAGATGGTGATACACTTTCTATGATTGTGTTGTTGTCCAACTGAGGTGGCATTCAGAATTGCAATGTATCACAAAATTGCTGCTCTGTTAACCAATAAGAATCGTTGTACTGTCTTTATATACATAGCAATTAATAACTTATTTATATCAAACAGATATGTACACAACTTGTAGAATGTCTGAAATATGCAGATATATGCAACTAAACTTATGTGTCTAACATTATACAGTTGTATAACTATGTTGATGCAATGTTCGGTGATCTTTCAAAGAAGTGTCCGGTGATCTTTCGAAGTAGTGTCCGGTCACATGACTTCAGTCACCTGTCGATGCAGCGTCCAGTCGCTGCGTCCAGTCAAACGGCTTCCACTTCTCGGCAAATGCAAGAACTTTCTTTCTTTGGTCGTCAAAGTTTTCCTTCTGATGTTTGCGCCACATTGTAGGCTCCAGATCTAACATCCCGCCCACGATCTCCTACAAATCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACAATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCACCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCATGATCTCCTACAAACTAAGTCACATTGTAGGCTCCAGATCCAACATCTCACCCACGATCACATACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTTACAGTGTAGGCTCCAGATCCAACATCCCACCCACGATCACCTACAAACCAAGTCACATTGTAGGCTTCAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCGCCCACGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCGCCCATGATCTCCTACAAACTAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCACCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCACCTACAAACCAAGTCACATTGTAGGCTCTAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTCATATTGTAGGCTCCAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCACCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATTCCACCCACGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCATGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATTCAACATCCCATCCACGATCACCTACAAACCAAGTCACACTGTAGGCTCCAGATCCAACATCCCACCCACGATCTCCTACAAACCAAGTTACAGTGTAGGCTCCAGATCCAACATCCAACCCATGATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCTCCTATAAACCAAGTCACATTGTAGACTCCAGATTCAACATCCCACCCACGATCTCCTACAGACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACAATCTCCTACAAACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACGATCACCTACAGACCAAGTCACATTGTAGGCTCCAGATCCAACATCCCACCCACAATCTCCTACAAAACAAGTCACATTGTAGGCTCCATATCCAACATTCCAGGCTCCAAATCCAAAATCTCACCTCCAATTTACAAACCAAGTCGCATTGTAGGCTACAAATCCAAAATTGCATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR045164	Family	RNA-binding region-containing protein RBM41/RNPC3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16105	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005689	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0030626	Molecular Function	U12 snRNA binding	Interproscan
GO:0097157	Molecular Function	pre-mRNA intronic binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf5907_15.13 global RNA-seq network