Gene detail

Detailed information of PE_Scaf5790_6.6 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf5790_6.6	OXA1	Superscaffold5	21725828	21730217	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf5790_6.6

GTGAAGACCTTGCGATTTGATCCCTGTATAAGACGTGAAGAATTTGCGAATATTTAATTTAGTTTAAATAATGCGACATCGTATGGAGTTTGCATGACACATATGCATATGGCACAGCAACGGCTAACGCATAACATGACCAGTTAATTAGATAATCAGAACATCCCCTATTATCGCTCGGTGTCATGCACTGGGCGTCCACTATGTGCTAATCTTACGCGCTTGCAGACTGTATTCCGTTCCTGGGCTGCATATAGTGTTATGTCACTGTCAACCCAATTTCTCACAATGTCCCGTCTGACAAGATTTAGCAACGTGCGGTGCTTTGTACGACACTCAAAGCTAGCTACATCGAGAAGTCGACAATATAGCAGCCTTGCTGCGTTCAAGTTCAACTCTTTACAAACCAACTTTTGCGATAAACATGCGTTGCTCCACCGACAGTCAGCAGCTTTCGGTCACCATCTCACATCTGACAACCAGTGCACTGGCTTTGTGTCGACAAGACACTTCTCGAGAGAAAGCTTTGATTACTACATGTCGCCAGAATTTCCACCAATCGGATATGCTGAGAAGTTGTTGGAGACCATGCATGATGCTACTGGACTACCTTGGTGGGCTAGTTTAGCACTGACCACAATCATGCTTAGGACAATGGTCACTCTGCCTCTCAGTATATATGCTGCACATATTTCTGTGAAGGTAGAACGCCTACAGCCAGAGATAAAAGACATGGGAAAACGGCTGGCTGGAGAGGTTGCCATGGCAACAAGAAAGTTCTCATGGAACAAGAGCACAGCTAAACGCAACTTCAAGAAAAATGTTAGTTTACATTGTACGCTTGCTATTTATAAACACATATTGTGTATGTCATACTGTGGGCGTGAGAGAGAGAGAGCATACATCCATGGGGACTTGATTTATTGATGTGGTGTTGACTTTATATAATAAACAAGTTAATCTCTGTAAACATGTCAAGTACATATATACACTTGCATACATACATGTTATGTGCTATGAAGTGTTCATCCATCATTTACCGTGTGCAAATGCTGATTGACTTTTTCCTCCTGCTGAGAACATCTTTTACACCACCCCCTACAAGATGTATGCAGTCTGTTGAGGGCACCACATCAAAACCCATGGAATGGTATATACAGTGGAACCCCGCTATATGGTCACCTCAGTAATACAGCCACCTCACAATTAAGGTCACCGTAGAACAGTCCCAAATTATTTCCACATACATTAAAGTATAGGATATCAGTCCCACTAATACGGTCACCTCGCTATTTAGGTCACATTTGTCCGTCCTAAAGGTGACCTTAATACTCAATATTAATAGGTTGCACTGTACAATTTGAAACGTAAATACCTAACTTTGACTTCTCAAAGCCTTAATTCTCTGGATGGGTCAGTTCAGCCACCCAAACATCACAACAAATTGACTTGCATGAACGACACTGATATCAGTGTAAAACTGAAACGTTTCCCTTTACGTGATGGTCATAGCTCCATACTGGCAAAATGTACCTAAACGTTTGAACCATCGTGACCCATCACAGATATGTACTTACAATAATAACCTCTATGTTGCATGCTCAGATGAAGCGACTGGTGAAAGATCTGTATATTCGAGACAACTGCCACCCAATGAAGACGATGCTGGTGGCATGGCTGCAGCTTCCAATGTGGTTCAGTGTGTCGTTTGCATTGAGAAACATGGCTGGGGCACTCCCCATTCGTGGAGGTAATTATGAAGATCTATGCTTGAGTTTGTAACTACATAATCCAATTCATTACTTATGGAATTTACTTCCTGAAAAATATAAACTTTGCATGATAGCCGTTTTAAATAATATTAATGTTTTTATTTCAGACCAGCATTGTGTCCATATAGAAAAAAGTACATCGATAAAATCATCATATAAAAATAAATAAATAAATATATCAACAAAAACAGGATATTAAAAAATTATATAAAGCTGCAACGTACTGTATATATCGCTAGTAACAATACTCTGAATGTTGTTTGTTGTTGAATAAGTTGATTTTTTTTGGGCAGTTTTCTTTTCATGTACAATATACTGGTATCTGCTCACCCTTCTTTTTTAAATTAATAATTTTGTCATTTAAGGTGTTACTTATGTAGAACAACACAGTTTGCAGAAACGTAATATAAAGTATCATGATGCTTCTAAATATGACACTGGTACAATTTCTTCAAAGAAATCACTACACCGTTGGGATTTTAAGTAAAAATCTTTCACTTATTGAATTCTGAATTGATTTTACTTTCAGGTGAGATTCTTCGGTGTTTCAATAGTTTTATTTGGTATGCAACCGTTAGTATGTCAGTGCAACTTTACATAATATATGGACCTGTTGCCACTAGGTGCTTTGCCTCCAACATCAACTTTTGTCTGTCATACTCAGTTTCACAGTAATGAATGTAGTCATACGTTTTGTTTAGATTTGCCTGTGCTGTGTCCTGAGCTGGCCACTGAAGGCGTTCTGTGGTTCAACAACCTACTTCTGCCTGACACGACATTCATCCTGCCTGTCACTCTAGCTGTCAGCAGTCTCCTCATCACCGAGGTCAGCTGTAATACCGTCTAGGTCACCTTGTAGCAGCTAGTGTTGCAGGGACCAAGTGGACCAACCACATTACATCCACAAAGCCCCAAAACGTAATGGCATTACGTATTGCTTGATGGTGGTTTGGTCGACACAAAATGAGTAATATGTAATTCTGTTGGTGCCACCTAACGAATGAAACTGGTATTAATGCACATATGCATTATAATTTCACTGAAATGTCACACAGACAAGTTATTTTGTTGTTGACAAGAAAAACTGAAGGTAATTTATAAGTACTGTGTTCTATGACATCCAGATGCATGCCTTGAGAAGAGGAAAACCAACGCTGATTCAGAATATATTTACTTACGGATTCCGAGGAATAAGCATCTTTATGATTCCGATTGCAGCTGCTGTGCCAAGTGTAAGTATGTTATAATGTTATACAGTAAACGCTATTCGCTGAAGATGTGGCTGAATATAATATTATATTCCGTGAAATGACTGGTATACATACTACATAGTACGTTAATACAATATGCCTACCCCAGTATGTGTGATTGTGGATCGGTGTAATTAACATTACATTTATATGTGACAAAAATAATCTGTTGAATAATTTATTACAAACAAATGCTTCATATTGAAAATAAAAAAATGAGCGGTTTTCAAAGCAACCATCTTTAGTCATGACTGAAAAATGCAATTTTGCTTGTTGCACATGACACTAAGAAGTAGCACTGCTTCGAAGCTCTCATGGTGAGTAAGTTGCCTGCATGTAAAATCAATGACATATATATATAATATATGCTCTGTCCAGTACGGATGTGCATTTCTATTTCATAGTCACACACATTTAATTATGACTACTATTTCTGACATGGTTATTTCTTTCAAAATTATGTGTATTTGCCAAGGGATAAAAGTGTGTGCATGACATCGGTTAAGTTTAACAATAGTTCCTTATATAACAGTAAGATAAAGAAATAGTGATCTCCTATGTGCAAGACGTCTGGATGTCTTGTTGCAGTGTATGTGTCTGTACTGGACGTGCTCCAGTCTCTACGGCCTCACTCAGAATGTTCTGCTCAAGTGTCCGTCAGTGCGGCGGGCGGTCGGCCTTCCAAAGATGCCGAGCGAGAGCAGCACACCATTCAGAGACATGTGGGAGATCGCACAAGAGAAATACCTGCGCAAAAAGCCAGCAAATCAGCTGGGTGATTAGGATTAAGGATGACGACATGTAACACAGGACTGTTTCCAGGCCAATGTTCTGTTGCAGACGACACCATCCTTTGATGGTTGACATTGTCATCATGACAGTTGACCTATTTCCTGTGATAGATAACATGTCCCTTATGGTGAAGAACACTATCTCCTGTGACAGTTGACAGTGTACTATGACAGTTGACACTGTCTCCTTTGATAGGTAATACTACGACAAATGACACCATCTCCTTTGACAGTTGACATTGTCTTCTGTGAGAATTAATAATGTCTCCTATGACATTTACCTGCAAGATGACTAAATTAGAAATCTACACCACATTTATGACACATACATTTGTCTTTGAGGAAGTGACAGACGCTGTCTTTTATGACAGTTGACACTGTTTTATGCCATAATGAGACTGTCATAACAATGAACACTGAAGTCCTACGCATGTCTGTGCCTTGACTATGGTAATTGTGAGAGAATTTCAGGGATGCTGGTTGTGACAACACTACTGGCAAGTTTTACACAAATCAATGTACATCAGTAATATTTGTACAGTTGTGGAAAATATGAATAAAAAGTCCTAAATTTACT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02096	60KD_IMP	60Kd inner membrane protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001708	Family	Membrane insertase YidC/ALB3/OXA1/COX18	Interproscan
IPR028055	Domain	Membrane insertase YidC/Oxa/ALB, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12428	OXA1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0031305	Cellular Component	obsolete integral component of mitochondrial inner membrane	Interproscan
GO:0032977	Molecular Function	membrane insertase activity	Interproscan
GO:0032979	Biological Process	protein insertion into mitochondrial inner membrane from matrix	Interproscan
GO:0033617	Biological Process	mitochondrial cytochrome c oxidase assembly	Interproscan
GO:0051205	Biological Process	protein insertion into membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf5790_6.6 global RNA-seq network