Gene detail

Detailed information of PE_Scaf5654_0.6 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf5654_0.6	SYNAPTOSOMAL ASSOCIATED PROTEIN	Superscaffold3	73849802	73854197	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf5654_0.6

CAGTTCTTGTACATTATTTATGTTAGCCAGTTCTGGTGATCCAGGTAGGCCTGTGATAACAACACTCGTGAGATCTCGCTATTGACATGTCGTCATACTAGGTATACCGCATAACCTTAGCCTAGCCATACTCATAGATATACTCAAGTCATACTCATAGCCTAGGCAACAGGATAGTCATAGGCATTGCCATAGCCATAGCCCTGGTCCTAGCAGCTAGCTAAGCTAGTCCTGGCACAGGCCATAATAGGCTAATCTATTTTAACGCAAAAAAGTACAATTTATTAAACAATCCCTACATTCACTGTTTTAATGCATATAGCACCCATAAGAGTAATACTAACTCACGTATTGACTTGTAATTTCATCCGACCACTTTGTCAGCGTTGTCTAAAAATCTGTCAGTCAACGTCAGGGAACCAAGAAATAAACGTTTTTTTCCTCTGGCGGCGGAGAGTTCCACCGCCCCTTGACTCGCTTCGATCCACCATGTGGCGCCACTGTTACATCCATAGCCGCAAATCGAGGTTTGTTTTGAGAGCCCAAGGCCCACAATATTCACCACGTTCCGACGCCAGTGTATATTCGCCTTGAATTCATACACATTTTTTAGTTACCTTTATTATCCACAAAACGTCAGTACTGCAGTTCTTTGTATGGAGCTATTACCAGATGTTTTAACCGCGACGCGTTCCTGAAGGCGGCGCCACAGTACCATCGATAGCGGAAGTTATCATAATGTGGTGATCGCGAAGCTTACTAAATACGCAATCTTTGTTATAATATAACAGTCAGCTCCACTATATATAAAACGTAATTTAGAATATTATGACGGCGTGTTGATGGACAAAATGGCACACGAAAAGGGGATTCAGTCGTTTGGTCAGGACGAAGATGATGAATGGTTAGACAGAGCATTCTGTGGTCAAAATACAAGAGACTATAATCCGTTTACGTCCTCGGACCCGAAGGAACGCGACGACCTGCAATCAATGAAGCAAGCCAGTGCTGCGAGGCAGTTGGACGGCACTCGTCGAATTATAGCCTCCATCAACGAGTCCGAAAGAATGGGCGTAGTTACCGCCGAGGTAAGCAAACGTAACAATAGTCTTACAGATGATCTACGGGAAATTCGATCAAATCAACGTACCTCTAACGGCACCGCATTGTAAATATGGGGGGGGGGTACTTAAATGGGGGACAGATCACTATAATTTCCTTCCGGGTTTAAGGTAAACAAATACAGTTCGTGTCAGTGATTTTTTGCCCCATGAAAAAATAGAAATTTGTAAAGAGGGAGTTGGATAGATTTGGAGAATACAACAATTATGGTATCAGAGAGAGTAATATTTTGGTGGCTGGCTGACAGGTCACAGGATGTCACTGGCAACGTGTCGGTGAAGGAAATAAATATACCAGGCGCGAATAAATAAAATCGTAAATTGTTTTTGGTAATTACAGATGACAACATGTTCCATGTTAATTTTCAAAAAAAAATTGTAGGTTATTAAAGCAGTAACACATTTTTTTTACAGGAGCTGATACAACAAGGTGAACAACTTGACAGCATCGAGAGAAATGCAGATGGCATTAACCAGAGTATGAAGACATCACAGATACATTTGAATAACATAAAGAGTGTGTTTGGGGGAATCAAGAACTGGTGGCAGGGTAGGAAGAGTGAGGGCGCAAATGCTAGCAGCACAGAGCGACAGAGTAAGGCACCGCAGGTTGAGGTCCAGGACGGTAGTACGTCGGTGCACCGCAGTGGACCTCTTGCACAAAGTATGCAGGCCTCGGCTGAGACAGCAGCTAGCTACCAAGAACCACGGTTACAGCACCAAGTACCCGCAACATACGACACACAGTTGAACAGCGATTTAGGCAAGTATCGCAACTATTCTCACAGTTTACTTTAGCTACCAGTTTTACTGATAGGTTTCATCTCAAAATGTCAATGTCCAATATCAGACAAAATTACTTTTATTTGACCTCAGCCCTCCATCCCCTCAGACGAAAGTGTATAAACATTGATATGATATAAATATATTAACAGTATCTGTCAGAAACAAAATATTGATGGATGTCCGATACCAGACAAAATTAGCTCAGACCCCTCACCGAAATGAAAGTAATTTCATCTGATATCGGACAATGACGTTCTGAGATGATCCCTAACAGGAAACACATTTTAATGGAATGAATCATGTACCATGCTTGCAAAAGTGGTGGCTGAAGTAAAATATGGTACATAAGAGTGTCTTTGGCAGAAAACATGCAACAAATAAGTGAACTAGTCTAAAACCATGGGCTGTGTGCTCATAATTCTGACTGTTCACTATATATAATCGTGGTGTATACTTTGGTTGTCAAATGCAATCAGGGATGGTCTTGTTTACAAAGTCCAAAAGATTTATATATTCCTAGTATTGACCATCAAACGTTTCCAGTTTTTGCCTAAATATTTTCAAGTCATAGGCAAATAGCATCATTGTCTAGATTATTAAATAATTTTGTAGTTACACTAAGAAAAACAATGATATAATGAGCTAGTATAAATACAATGTGTGTATATATATATATACAATGTATATATGTTGTGTGATTATGTTGTAGATGACATGTCCTCTGGCCTGACTCGGTTGAGGGGCCTAGCTATGGGTCTTGGTGACGAAATGGACAGACAGAGTGAACAGTTGGACAGGATTGATCCTAAACTCGAGCGAGCAAACATCATTCTCAAAGACCAGAACCGACAAATGGGACATATAATAAAAAAATGATTGAGTCATTTCATCAGGCTTTCAAAAGAAAAGTCTGTTTCCATTAATTAGTCAAATTATTTAGTTAAATAAATCCCAAACATGTATTTATTTGGAATTTATTTAAACAATGTTTACAGCTTTGTATCCACCATTTGTTAATGGAATACACAGCCAACCATTGTAGGGAAGACATCAAATTTTGGAAAGGGTTATGTTTGATCAAATCCACGATTACTTCCATTCCAAAGTGCTATACTACAATAGCCAATATGGGTTTAGAAAGAAACATTCTACTGAGCTTGCTACACTCAAAATTATAGACAGAATTATACAAAAACTCAAAAAAATATATACCTTGATTTATCAAAAGCATTTGACACAATTGATCACAATATATTAGTACAGAAGTTAAATTACTATGGATTAAATGACAAGGCTCTGGATCTTTGTAAGAGTTATTTACAAAATCGTAAGCAGTATGTATAAATTGAAAATGTTAAGTATAAGAAAATAGTCATCAACACTGGTGTCCCTCAAGATTAAATTTTAGGGCCACTCTTATTTATTATATACATAAATGACAGCACTTTTAGTGACCTTTTCAAATTCATAACGTATGCTGACGACACCACCCTTACTAGTACTCTAAATACATTTAACGATTCAGAAGGCCAAATGCAAAGTGAAAACATTAACGAAGAACTAATAAAGATTAGCAATTGGTTGAAAGCTAATAAACTGTCACTAAATGCCAAAATAGACTAAATTCAGAATTAAAATTTTACTACAAATTAACAACAATCTTTTACCCTACTACTTCAATGTTTTTTACCAACACACACGTCTATGATATTCATCAGCACTACACATGTGAAAGATATAATCTGTATATGTCCAGATTCAAACATGAATTTGCCAAAAAATGCATTAGACAACATAGTAGAGCCAGTTAACAATACACCAAGTATTATCATGAATACAATTTACACCCACAGTCTATATGGTTTTCAACATACGCAAAACACTTTTTTATATTAAATTATGAATCCAATTGTCGTATTCATAATTGCTTTATTTGTAATATGTATTAAAATGTGTACCTGAGTATCCATATATACGTCGATGTGTACATGAATACATGTAATCATTCCTTGTATTATGTATGTATGTTGATACATTGAGTAATTATCAACTATAAAAACAAGTCATATGCTATTCTGATTTGTGTCATGTAAATGTTGTAGTTGTTTATATTTATGGGGTGGCTCCTGTGCTAGCGATATTATATATCTTAATGGGAGTCTCCTGACCTTATCTGTTACGTTATTCACTGTATATGTATAATTTTCATAGGTAAAATAAATTGATTCTGAGTAAATATTGAAACTGCACTACCACTTTGGAGATTCCAAATATGAGCATCTTTGTTTAAACATATTTCTAGAGATAGGACAATTGTTTTGAAAAAGTGGTAGACTTATAGATGATGAATTTACCACAATGTAACACACTATAATTGTTCTGCTAATCCAACTGTGGTTGCGGCTGAAGAGACACCAACAGTAATTAATTATTAAGAACAAATCAATGTTGAGTCTTGTAGTCATGGCAACCATCTGGTGTAAGCAGCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR000727	Domain	Target SNARE coiled-coil homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19305	SYNAPTOSOMAL ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005484	Molecular Function	SNAP receptor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006887	Biological Process	exocytosis	Interproscan
GO:0006906	Biological Process	vesicle fusion	Interproscan
GO:0016082	Biological Process	synaptic vesicle priming	Interproscan
GO:0019905	Molecular Function	syntaxin binding	Interproscan
GO:0031201	Cellular Component	SNARE complex	Interproscan
GO:0031629	Biological Process	synaptic vesicle fusion to presynaptic active zone membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf5654_0.6 global RNA-seq network