Gene detail

Detailed information of PE_Scaf5346_1.5 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf5346_1.5	TESTIS EXPRESSED GENE 14	Superscaffold5	34446277	34449305	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf5346_1.5

GTGGTATCACCATAAAGAGACAAGATGCAGGTTCCCACCACAGAAGATATGGTTAGCCGAAGTATTTTGGGTCAGATGAACCCAACAAACAACGATGAACTTGGAGTTTCCTTGCATGACGCCGCCATAAACGGCTACAAACGAAAACTCAAGAAAATCCTAGCCAAAGGTTGGACAAAAGCTGTGCACATTGGTTATTGTAACTTATGTTTCGATATATAGTACCTAATTAGAAAAAATACTGTATTGCACCTGTTAAGTGTATACACCATATTTGTTCCATAATTAGCGTACACCCTTTTAGCAGTATCTTACATTGATTTATGACTAGAACTGACCATCATCATCATCATCGTCGTTTAGAGGCGGTGTTTCCAGACTCTGCTGGGTTTGCCTTTCTTCCAATTTCCCTCTTCCACTTGACACGGTCCCGTGCATCCCGATGGTCGATACCCATCAGATTCAAGTCTGCAGACACGGAGTTCTGCCAGGTCTTCCTTGGTCTGCCGACGGGAGCTGTCCCCTCCACCACTAACTTTGTACAGCCCTTCACCCAGTCCTCGTCGTCCTTTCGCTCTACATGCCCGTACCACCTCAGCCTGCTTCTTCTGATCACATCCCCAATCGCCTACACTCCTACTCTTCTTCTAAGCTCTGCACTGGGCTGTCTGTCACTGAGTGATGCGCCACACATCCATCTCACCATCCTCATCTCAACCCTTTCCATCCTCGTGTCATGATCGGTCCTCATGGCCCACGTCTCACACCCATACAACAGGCAACTTCTGACACAAGCTGTGTACACCTGGCCCTTCATCTTCAGGGGGGGCGCTTTGGAAGTCAAGAAGGGTGTTAACTCCCTGAACTTCTGCCAGGCACACCTCACTCTCGCTGTTACCGCTGCATCCACCCCACCCTTCGCACTAAGCATGTCACCCAGGTAGCAGAAGTAGTCTACTCTGTTGTATGTCTCTCCATCCACCTCCAAGCCTTCTTCCGTCGCTTCTGCAGGTGGTACCTCTCCCCGGCACCTCTTGCACACAAACATCGGAGCCATTTATTATAATTCCAAGTTAAAAGGTGACAACTGTAGAAAGTTCCGCAGACAATGCAGTGTCCATATTACCACATGTGGATATATAAATCACTTGCCAGTCAGCTTATGTTGATGTGTGTCATCCCTGGCAGAGCTACAGAGAAATTACAAGGAGCACATGTTGACAGAACAATAACAACAGGATATGCAAATTTGTGAGAATAACTATTTGAAGAATAACAAGAACAAAGAGGGAGGATTGAAGAAGGATGAATGACCTGAGGAAAGAGGTCGGGATGCAACGCAGCCTAACAGGAGAATTGATGAGAGGCCAGATGAGATGGGTGGGCCATTTCGAAAGGATGGATGTGGACAAACTGGCAAAGAGCAGAGGCGGAAAAACATCAAGGACACAGAAAAAGGAGAAGGCCACAACTAAGATTGGAGGATTGCGTGGGGAGGGATATGAGAAGATCAAAGGAGGATGAAACTTGGAGAGAGGGGGCTGTGGATAGAAAACGTTGGAAAGGAAGAACACAAGGAGTGGTTCGACAATACTGTACCTGACCCTCATCTCTGCACAGCACGGAACAAGGGGGAACAACACAATGTCACGACAGGATCCATGAGTTTGTCTGTGTTTTAGTATATCTTTCTTACAGATCGTTTGTTTCCCTCCCTGCTAACATGTCCCTCCAGTGAGAAGTATCTTAAGACGTGATAACCACAGATAATTGAAAAAATTTGCATTTCACCAATTTTGAGACACGCGAGTGTGTGGCTCCATGATGGTTTTACCTTGTTTATAAGTTGGGGTGGCACTGCTTGGTGAAGTAAAATACACAAAGGTGGCTCCACTTGTTTTCTTTTTCCGTACTGGTGTGAGAAACAAATGTTAGTTGGTGTAACCGTAAGATTTATTTAGCCATACTGTAAGCTTAGTAAAAAAAACTTTGTTTCCACTTATATACAAAATAGCACGGTTCGTATCTGCCATGCCTATAGTTATGGGCTCGACATGCAGCAACGATTTAAATTTTTAATAAAAAGCCCATTCTATGACAATGCCAACAATGTTTTTTTACCTGGTAATTCTTAAAATTAAATCCAGTTATAGTCCCACACAAAATCATGGTATTTGAAAAACAAAAATTCACTATCCAGAGACCAAACTTGAAAAGTTGCATATTATGCTGCGTTCCAATCACCTCATATATACCGTGAATACAACTTTGTAACTCATACTTGACCCAGTTGCATAAATTTACAAGTGATAAACTCGAGGAGCTCATGAACTTTCTAATTCACCAAGTCATGTTTATGATATACACTGGATAAACGAGCCCATTGGAACGCAGCGTAAATTGGCATAGATCTGTGTTCTACATGAAGAGTATTCCTCCATAGAACCATGAGTGGGCCATCCCAAAATTGATTACAAACATTCTAAGTTCTTGCAGATTTTTCTGATCTTTTATTTCAAAAATGTCTATCGGTATGTGTGATTTATTTTCCACTAAATATATTAACAAACAAAGTTCAGGCAAGTCGAATATAAACAGAGTCATAGTTCAACATGTAAGTTGATTCCACAATGTGTTATACATTAATTAATTTTGTGAAAATAGAACCTCTCAGAATCATGGGTTCTCACTCAATAACCACCAACATCATCACATGACAACAGTGAGCAGTGACACTGATGAAGGCACCGCAAGGGTTCCAAAAGTTCCTGTAGCAAGAACAAAGGATTTTGAGAGTTAACTGCTATTTTCTCAAAATGTAATGAGTCATACAATATAATGGTACACGTATGAAAAGAAGGTAGGGGATGTTTTAAATGTGACCATATGGCTGGTGTGCGAATGTTGCAGGCATCGATGTTGACTACATGAATGCAGCCGGCCAAACAGCATTGTTCTGTGCCTGCTTCGAGGGGCAGGAGAAGGTCATTAGCGTCCTTCTACAGAATGGCGCCAACCCCAACCAGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13637	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR039339	Family	Inactive serine/threonine-protein kinase TEX14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23060	TESTIS EXPRESSED GENE 14	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007094	Biological Process	mitotic spindle assembly checkpoint signaling	Interproscan
GO:0007140	Biological Process	male meiotic nuclear division	Interproscan
GO:0008608	Biological Process	attachment of spindle microtubules to kinetochore	Interproscan
GO:0043063	Biological Process	intercellular bridge organization	Interproscan
GO:0051306	Biological Process	mitotic sister chromatid separation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf5346_1.5 global RNA-seq network