Detailed information of PE_Scaf5323_3.5 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf5323_3.5COLLAGEN ALPHASuperscaffold56339341763416974-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF01413C4C-terminal tandem repeated domain in type 4 procollagenDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001442DomainCollagen IV, non-collagenousInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR036954Homologous_superfamilyCollagen IV, non-collagenous domain superfamilyInterproscan
IPR050149FamilyCollagen superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005581Cellular Componentcollagen trimerInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf5323_3.5 global RNA-seq network
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