Gene detail

Detailed information of PE_Scaf5295_0.2 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf5295_0.2	TRANSLATION FACTOR GUF1-RELATED	unanchor8271	76	4368	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf5295_0.2

TACAGCTTTGACTACGAGGACAGTGGCTACAGAGAGGCCAGTCTCATTAAGGTAGGACGATGATTCTTGCAGAGTGGTCACATCTGTCTTATGTTGTCTCCTGAAGATATGGCATAGACCTCTTCTCTTTCTCTCTGTCTCTCTCTCCCTATCCCTCTCTCTCTCTATCTATCTCACTCCTCTCTCTATCTCTCTCTCTCTCCCTCTCTCTCTCTATCGATCTCTCCCTATCTCTCTCTCTCTCTCTCTCTCGCTCCTCTCTCTCGCTTCTCTCTCTCTCTATCTCCGCCTCCTCTCTCTCTCTCTCTCTCCCTCTCTCCTCTCTCTGTGTCTGTTTCTGTCTCTGTCTCTCTGTCTGTCTTGTGTGTGTGTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTCTCTCGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCATCTCTCTCTCTGGCTCCTCTCTGTCCTCCCTCTCTCTCTCCTCTCTCTCTCTCTCTGTATCTAGGCTCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCGCTCCTCCTGTCTCTCCCCCGCCTCTCCCCCTGTCTCTCCCCCGTCTCTCTTTTCACATTGTCAGTGACACATGGGATGGAGAGAAGAAGCAGGGGGGCAGGAGGGAAAAGGTTACTTCTGGATGGACAGTCTTCAAACATTTATTAAATTTGTAAATGTAACATTTTGTTGCTGTAATTATTTGTACGGATATAAACATTAACTGACTGAGAAACTTGGAAGTACTGGCTCCGTGGATAACAACAGACATTGATTTGAGGCTTCAGCAACCCGCATGTAATATGACCGAGACAGGGCAAATGACAATGTCAAAGAGATCAGTTCAGCTGTTGGAAGGAAACCCTGTCCGCCCAACAACACTGTCACAATCATGTGGTTGGTGACATACCTCCAGTGGGGCCAAAGTCGGCCAAGCATAGCCACCTATTATTGTCCATGCAAAAATGCAGTGGCAAGATAGGTTTTGTGTCACCTGCTGCAGTGAACCAGGTATGAAGTGGCACAGGCCTATTCTGCACACGAACTAAAAATAGCTGTCTAGGTCATGTCCCATCAGTTTTGTGATTCTGGCAGAAATACATGCCTTGTCATCTCATCTTTCAATGTCTAGTTTTTTTCTCAACAAATAATCCTTAAGTAATAAAACACATTTATAAACCCATACAGTAAAAAAGAATAGAGTTAGCTTCAACTTTAGCAACAAATATAAAAACTACTGAAAATATCTCAACAAATGTACACCATTTTAAAGCCTATGTCCAGTGGAATCCAAAAAGTTACAACTTTCCATTTCACAAGTTTGCAACTTAATACCCACTTTACTGTGACAGGACACATCAGGTTTTTATACTGCCAACAACATACCCCCGGTACTTTAGTTTAAAGGGACGTACGTTCATTTAGCGGGCATAGTAATTTCTAACTGGAAGTCTCCTGTGTTGACTGTCGGACAGTGAGCATCGTTGAACATCAAATAGTATAGCAGTTAACTCAGCCCGACTCAGCCGTATTTCCAATAAAGCTTGTTTTGAAACTGGATGTTTTGTTTACTATTTGAACATGCACCCGCGGTCGTGCCTTCAAACTGCAACCATTGTTACGGGTTTACTAAACACAATTTAATGGGCAGTAGACCTTCAACATAGTTAGTATAGTCTTTTAAAAACATTAAAGTAATTAATATATGAAAAACTAGGAACACTCTACGTCCTTTTATGACAGCTCAGAGTTCACAGGTGAGAAGTAAAGGGTCAGAGTTCATTCAATGTAGGACATGTGTTTCAGATTGCTATCTTGCTGAATGGCCAGGAAGTAGACGAGCTTACACAGATTGCACACTTGAGTCGCATGCGCACTGTCGCCAAACGCATGGTCAACAAGTTGAAAGAGTCCATACCACCACAACTCTTCGAGATTGTCATCCAGGCCAAGGTCGGGGCAAAGGTCATTGCTCGCGAGAACATAAAGGCCACACGCAAGGATGTTCTTGCTAAATGTGTAAGTCGAGATAGTTATAATCTGTCATGTGACAATTCTTGACAGTTATAATCTAAGCCGTGTGACAGGTCTAGATAGTTATGATCTAAGTCATGTGACAGCCATGTGACAAACCTGGTGTACTTTGAATAGATATTGTTACCTGTGATACCTTAAATAGATATTGCTACTTGGTGAACCTTGAGTAGATATGAGTTGCCTGGCGTACCTTGAATCTACACATTCTACACTGACTTTGACTCCCTGTAATGGTATCTTGTCCTCGGCACCGAGACCCACTCACCTCTTTCTGTGTACATTCACTTCCTTTAACTATTGGCCTGAGATCATGACCTTCCAAGTGGCGAAGTATTTCAGAAAATGCAATGATAGTTATTTAGAGTTATTTACTTGCATGTTTTTGATATGCTATACATTTCTGGAGGGCCTTTTTCATACCTGAGATTCCTGAGTGGTGATCAGTTCAGCAGATGGAACCACTGTAAGTAAGTGGGTTGTTGCTCCGTGGGTGGATGGGTGGGTGGGTGGGTGGGTGGGTGGGAAGCTGCTGCAGTAAATGTCGTTGTCTGAGGTAGTGAGACGTGCTGTGATTGCAGTATGGCGGAGACATCACCCGTAAGATGAAGCTGCTGAAGAGACAGGCGGAGGGCAAGAAGAAGATGAGACGCATCGGCAACATCGACATACCCAAGGAGGCATTCATCAATGTCCTCAAACGATGATCTGATGATGAGTTTGTTACACAATCATTGAGTGCATTTATGGGCATCATGTATAAATCATACCATGTGACTTTCGTTGTCCTAAATCATATTTATTGTTCATTAGTTTGAACAGGTTATTTGAAATGTTTATACATATACGTACCAGTACATGCAAAAATAAACTACATTTTATGATCATTTTAATATACAATTATATGGTACTTCCTAAGATGTACAACCTTGTAAGCATGAAGTTACATATATTACGGCATTGTTTACAAACAAGTTCCTACATAAATCTGTGGCACACCCTGTGTCAGCCTCCTACATAAACCTGTGACACATCCTGTGTCAGTCTCCTACATAAACCTATGGCACATCCTGTGTCAGCCACCTACATAAACCTGTGACACACCCTGTGTCAGTCTCCTACATAAACCTGTGGCACACCCTGTGTCAGACTCCTACATAAATCTGTGGCACACCCTGTATCAGACTCCAACATAAACCTATGGTACACCCTGTGTTAGCCAACTACATAAACCTGTGACACACCCTGTGTCAATCTCCTACATAAACCTGTGGCACACCCTGTGTCAGACTCCTACATAAATCTGTGGCACACCCTGTGTCAGTCCCCTACATAAACCTGTGGCACACCCTGTGTCAGACTCCTACATAAACCTGTGCCACACCCTGTATCAGACTCCTACTTAAACCTGTGGCACACCCTGTTTCAGTCTCCTACAAAAACCTGTTGCACACCCCGGTGTCAGTCTCCTACATAAACCTGTGGCACACCCTGTGTCTGATTCCTATACATAAACTTTCGGCACACCCTGTGTCAGTCTCCTACATAAACCTGTGACACACCCTGTGTCAGACTCTTACATAAACCTTTGGCACACCTTGTGTCAGTCTCCTACAAAAACCTGTGACACATGCTGTGTCAGTCTCCTACATAAACATGTGGCACACCCTGTGTCAGTCTCCTACATAAACCTGTGGCACAACTTGTGCCCGATTCCTATATATAAACCTTCGGCACACCCTGTGTCAGTATCCTACATAAACCTGTGACACACCCTGTGTCAGACTCTTACATAAACCTTTGGCACACCTTGTGTCAGTCTCCTACAAAAACCTGTGACACATGCTGTGTCAGTCTCCTACATAAACATGTGGCACACCCTGTGTCAGTCTCCTACATAAACCTGTGGCACAACTTGTGCCCGATTCCTATATATAAACCTTCGGCACACCCTGTGTCAGTCTCCTACATAAACCTGTGACACACCCTGTGTCAGACTCTTACATAAACCTTTGGCACACCTTGTGTCAGTCTCCTACAAAAACCTGCGACACATGCTGTGTTAGACTCCTACATAAACCTTTGACACACTGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06421	LepA_C	GTP-binding protein LepA C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006297	Family	Elongation factor 4	Interproscan
IPR013842	Domain	GTP-binding protein LepA, C-terminal	Interproscan
IPR038363	Homologous_superfamily	LepA, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43512	TRANSLATION FACTOR GUF1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0045727	Biological Process	positive regulation of translation	Interproscan
GO:0097177	Molecular Function	mitochondrial ribosome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf5295_0.2 global RNA-seq network