Gene detail

Detailed information of PE_Scaf5198_0.7 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf5198_0.7	NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF	Superscaffold5	21262250	21265440	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf5198_0.7

GGGTCACTTGGCCCATTTTTTAAAGTTTGCTTCAATTTTTTAGTAAACAAAAATCTACTGAAGATATTTCAACAAATGAGGTGTAATTTTAGAGCTCACGATCTGTGGAATCCAAAAAGTTACAAAACTTACGTTGTAGTTGAGCATGTCGACTGATGTGTTGTTGTTGATCATGTCTGACGTGTTGTTGAACATGTCGACTGATGTGTTGTTGTTGAGTGTGTTGACTGACATGTTGTTGTTAATCATGTCGACTGACGTGTTGTTGTTGAGTGTTGACTGATGTGTTATTGTTGATCGTGTAGACTGACGTGTTGTTGTTGTTGTTACTGCAGTCACACAAGATGTCGTGGCCCTTCCTCGAGGCAGTCAACCGGAAGGAAGTGCCGGAGTACTACATGGTCATCAAGGAACCAATGGGTGGGTCTCAGGTCGACCGCTTTCATTATCACCACACAACATCCTCTGGTGCCACAGCTAGTCAAGCCAGTGTACTTAGAAAAGTCTTATTAAATGATAACATTAGGCCTTTTTTTGCAATTGAGAAAACAATTATATTTTTGTGTGAAATAAATTATTCAAAGTCGGATTAGTTATATGAATAATTTTGCTATCCATGTCTGCACGGATTATTATTATAATGAAACAATTTCCTAGCAAGACTTGGTTATTAGGTTCCCATTTCAGAACCTGTTTGGGCTTAACTTTAACAAATATTTTTTTTTTTCTTTTTGACCATCTTGCTGACATGCTATGTCAACATGTGTGTTTGCTTGTTTGTGTGACTAGATCTGACAACCGTCGAGAAGAAGGTGTCACAGCAGCAGTACGTGAAGCTCGGCGACTTTGTCAAAGATGTCATGAGGGTGTTTGACAACTGTCGCTACTTCAATTCCAGTGACACACCTTATTACCAATGTGCAGAAGTTCTTGAGAATTTCTTTGTTCAGAAACTAAAGAATTTCAAGGACACACTGTAGAGATGCATACAACAAACATATTGTCAGTGGTCCACAAGGCCAGTTCGATATGGTGTAACTCTGCACCATCAAGAAACGTCAAAATGATGACCATACTATGCACTAGATTGTTTCACAAATTTTCTTGACATTTCAAAACCCCATGGCAGTTAATATGCAGTGGATTTAATTCATATCACTCTAGACAGTTTGATTGGATTTGGCTTTCCCCAGCGAATGTTGTGCCTTAATATGTTGCGGCAGCATTATGAGATGGCTTCTTCTCCAAAGGTGACATTTCTCATACGATGCAACGTTTCTCAAGGCGACACAATAGAGCATTTTTCTCATTGTTACCGTAAAACAAAATGCATTTTAAACAATACAGCAGTTTTCTCGTTGTGACTACATTGTTTAATATTACATGTTAAACAATGTAGTTTTTCCTGTTTTTTCAAAGTCATACTATTACACTTGTAACAATGTAGCAGGTTTCATAGTATCAGTGAACAAATATTGCATATGTACAATGTACTCATTTGTAAGTGAAACGTTGTTGCACTTCTATGTGCCTTTTGTTCCACTAGCATGATGATGGTAAATCCGACAGTGTGGAATTTGCTGTTTTCAGGAACTGTACATTTCTCTTTATTCTGTCCACAAAAGTCAATACGTTTCATTTGAGAAAATGAAAATCTTGCTGGAACTGTCACACGACAATACGACATTCTTTCTAGGGTAGTTTTTATAATTTATCTTGTATCTGTAATTAGCGTAACGATCATTTATACAAAGTGTGTATTTTAGATGAAGCATGATGTATCCTGTAGATTATCTCGTGTCGTTTCGACCATTGGAGTGCCAACTTTCTAGGCTTGGTCGGATGTATCGTATATTCTCTGGTCATAATTTATAACAGCAATAGGGATCGTTTTGTTTTTCATTGACACAATGCAGCAGTTGTGTTGTTTCGTGCAGCTTTTCTGTATAGTATAATTTAATTGGATGGTGTACTGTAGATTACTGTCAGGTAGCTATTAATGTTGACATTACGGCAGGAGAGTAGATATTATATCATGGCCATGTATCATCTAGTAGTCGTGTTATGTATAATTTGTGACAGTGCTGCCTTCAGTGGCACAGCTAATGTTGTCACATTTCACTGAGAATCTACGGATAATAACAGATCGGGGATGGACATATTATTCTTATCGCCGTATGTTTGATCTTGCACCTTTCACGTGTCCCTGTTGGGAACATAACCAAACAGTACAGAGGTTTTGATAGATGTTATCAGATTAGAGAGATTCTAGACAGACACCAATGAAATGTGGATATTTTTTGACATGGTGGAAAAAAGCGATGGTCTATTATTGAGAGACGTATCACATTATGAGACCTTGCGTTTGGTTCTGTTGTCGCGAATCACAGCTTTGTCTCACAGCGCTGTGACTACAGTTTGATATAAATATGTGTGTATATGAAATGTATAGTTTGTTGTTTCGTGTAAACGCCGGAGTGAGTGTTTGCAGGTGGCAGTGTCAATGACACTTCTTTCTGTGGACTCTAACATTGTTACAGTGACGGTGCCGTGTCGACAATGTCATGTCGTATGACACAGAACTCAATAGGTTGTGTTGCCACATGCACAGTTAACATAAACCACTATTGACGTAGAACCATGAAGTTTTAATGTGAAGTTTGTATGATAGCAAGGCATAGTCTGTTTATTATTGGTATTTTTATTATGTAAATTTACATTAAAATCTGGCAGACCTTGATGGTTGTTAGCATGTGTATTTCACCAGGGGTTTGTATACTGTGCTTTTCAAATTATGACACTGTTTCAATTATACAATCTTTGATGATTCCCCGGTGCAGTGGTAACTAAAGGTTTCCTGTGGAACTACACATTTCCAGATCACGTCTTTTTAAGTTTTTCACAGTCAAATTTATTTAATTTTCTCGTTATGTTTCTCCACTTAGCAGTTAGCTTGATGAAGATAAGTTTAACCATCCAGTCCGATGAAACTACTGACACAGTCTATACTTTCCTCTGTTATTTGCCAGCAGGGAGCTAGATCTGACATTTCGACAGCTGACCACTCACCAATGAAAACAGCTATCCAGCTTGGTTTCATGACTACCGGTAGTACAACAGACCGCTATGTTTTGCCTTATGCAATAAAATAGCCCTATTGGTTGACATGTTCTGTTAGTTTGAATAAAAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439	Bromodomain	Bromodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487	Domain	Bromodomain	Interproscan
IPR018359	Conserved_site	Bromodomain, conserved site	Interproscan
IPR036427	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR038028	Family	Nucleosome-remodeling factor subunit BPTF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45975	NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016589	Cellular Component	NURF complex	Interproscan
GO:0035064	Molecular Function	methylated histone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf5198_0.7 global RNA-seq network