Gene detail

Detailed information of PE_Scaf4843_10.14 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf4843_10.14	HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H	Superscaffold1	15170614	15172968	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf4843_10.14

AAGGAGTTCTACCTGATAAAGTGGAAGAACTGGGACAGTGAACACAACACGTGGGAGCCGAAGGAGAACCTCGACTGTCCTGAGCTGCTGGCCACCTTCCACGAGATGTACACCGGCAATGGCGCCAGCGGTCTGAAGCGCAAACGACTGAATGATGTCATGCCGCAACAACCGCACTCGAAGCAGCGCCGAATCAACCAGCTGATGGTGCAGCTGATGCAGTCACCGGCAGACATCACCCCCCAGAAGCTTCTGTCTGTGTCGTCGCCGGTGAAGGCGTCGGCGTCGTCGATGCATCGTATCCATCAGCTGATCGCTCCTGTCGGCAGATCAGCGGTTTCTTTGAGGTCGTCCCCGCATGTATACGGTGACATCACCAACAAGAGATCGAAGGCTTACCGACAGTTGAAGGCTGAAGTGCAAGAAGCACTGAAGGTGTGGGAGCTGCACCTGAATAAAATCAACACTGATCCGGCGCCGATCTTCATCGAGAACAACGTTGACATGGAAGGCCCACCCGACAAATTCACCTATATCAATGACTATCGCACGATGCCTGGCATCGACATCCCGCAGGACCCAATGGTGGGATGCGAGTGCACTGACTGCTATGACGAGAGAAAGACGTGTTGCGCGGCAAACGCCGGTGCCAGCTTTGCGTACTACAAGAATGGGCGCGTGCGAGTGAGTCAGGGCACGCCGATCTACGAGTGCAACAAGCGGTGTGCGTGTGATAGCAAGTGTTCGAACCGCGTCGTGCAGCATGGGCGCAAACACAAGGTGTGCATATTCCGCACGAATAACTGTCGTGGCTGGGGTGTGAAGGCCATGCACAAGATCAAGAAGGGCGCCTTTGTGATGGAGTATGTTGGTGAGGTACGTTTGAAATCTCAAAGCAGTCATCCACCCTTGTCAATGCTAAGTGATATCAAATTATTATATATACATTAACGTATTTCTAAGAAGTACATATAATGGTATAGTCTCATGTAATTTGTTGGTACTGATTTACATGATTTATGAATCATTCCTGTTGTTGGGAGTTTTCATCTTAAATGAGTACTGTGTTCTTGCAAAAAGTGTATGTGTCATGCATATACTATGTTGTAGGCAAGATAAATTTTCCTTATCTCATTTCACGTTTGTTATGAAATATTGGTCTGTAGTGCTTGCATTTCCATATTACAAAAACAAATCCTTTCAGTAAAAAATTCATTCACATAGCACCAGTTTATACTCAGATCATCTGGTCAAGAGGTATATAATTATCCAAAGGGGCCCTTTAGTAAAAAATACAAACCAATGAATATGAATACTTAACCAGAAATAAATAGTCGTTTTTCAATTGTTCGATCATTTTACATAGGTACAGCAGGTTATACTTTTTCATTTACGTAATTTGATCCATATAAACCCGCTGAACCAGGTTTTATTATTAATTTACTTATTTGAAAGTTCAATTGACCAAACGTTCAGTTGTCTTTGATTTTATAGTCACATCTCCTTGGCTCACTTGGACACCTTTTTTATTTAATAATTTGATTTATTTTGAACAATTTTGTTTAGTCTAATTGTCAAAAATTAGTCCATTTTGTCCTAACTATTTGTGGTTTGCCATCTGAATATTTTATGATTTATCTTACTCCTAAATACAGGTAATAACAAACGAAGAGGCAGAGAGGAGGGGCAGAATCTACGATGCAGAGGGACGCACATATCTGTTTGACCTCGATTACAACGATGGCGACTGCCCCTTCACAGTCGACGCTGGCTTCTATGGCAACGTGTCCCATTTTGTGAATCACTCGGTAAGTTTTTATATACATATATACAGTTGAATCTCACTTTACAGTCATCTCAAAAATATAGCCACCTCGCAATTAAGGTCTCCTTAGGACAGTCCAAAATTATTTCCACACAGAATAGAGTCCCTCTAATATGCTCACCTTACTATTCAGGTCACTTGTCCACTCCCAACTTAATTGTGAGGTTCCACTGTATAGAACATGTATATAATTATTTACTTATAAATACTATATTATATAAAGAAATTATTTATATATACAGCCTGTACATAGTTTTCCCTATATTTCACTTGTAATAATTGCACATACCAGGTAAGTCAATTTAAATGTGTATGATTTTTGACGATATATATATGCAGACGCCATTGTATAGAACTCTGGAGAGAAGAATCGTTTGGATGAGGAAACATTTCTTGTTATTGTCACACGATTAAAACTAATTTGCTGTTGACCAGGGTTGGTAATTCTGCAGGTAGAAAACTAATGGTAAAATCCCTTGTACTATTAGTGTCCGGTCTTACATATTATTCTCTCCTTCTCTGCAGTGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF05033	Pre-SET	Pre-SET motif	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR007728	Domain	Pre-SET domain	Interproscan
IPR011381	Family	Histone-lysine N-methyltransferase SUV39H1/2-like	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR023779	Conserved_site	Chromo domain, conserved site	Interproscan
IPR023780	Domain	Chromo domain	Interproscan
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan
IPR050973	Family	Histone-lysine N-methyltransferase, H3 Lys-9 specific	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46223	HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0042054	Molecular Function	histone methyltransferase activity	Interproscan
GO:0046974	Molecular Function	histone H3K9 methyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf4843_10.14 global RNA-seq network