Gene detail

Detailed information of PE_Scaf4774_3.13 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf4774_3.13	VACUOLAR IMPORT AND DEGRADATION PROTEIN 24	Superscaffold5	15570052	15576463	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf4774_3.13

TAGAATCGAAGGAATTTCCCTTTGCGTATTTTGGTTTGAGGAAGTTGCGTTTTCACGACGTAGTTTCTTTATTTTTTCAAATGCCAGTACGACTCGAACTTGATCCGCCACCTCCGGCAAATTCTGTTCAGGCGGGAGTTGCAACATCTCTACTATATAGTGGTTCAAAGTTCCGAGGCAGTCAAAAGAGTAAAGGAAATTGCTACGATGTTGAAGTAATTTTGCAGGTAATGTCACTGTCAGTGTTAGTAACTGCTTTGCTAAGACGCTTAGCCTTGGGCTAGAGACTAAGCAGTAGACTATTGCACTAGGCACCGTCGTACGCCTTAGATATATACCCGAAAAAGACAACGACAATTTTATTTTTTCTCTCTTCTCATACTTTTGGTCTTTTGTATATTTTCTTTTCTCTTTTTTGTTTCCTCCAAGTTCCAACAATAAAGATAGACCAACCGTTGTTTAATGATGAAGATTGATTGGTCAACGTAGCATACAGATACAATTAATTTAATGTAGTGTGATAACGACACTGACTTTGGCACTCACAGTTACCAGTCATTAGGTGCGGTGAATGTTTAAGTTGCCTTAAAAGTTAAGGCTTAACAAGTTCTTAACGAGTTCCCAGGATCTGGAAGCACGCCTTGGTTCAGCCCATATTCAAAAAGGTCACCGTAACCAAGCAGCTGTACCGGCCCATTTCACTCATGTCATTGTGAGAGCCGAGATCACCCGTCACCTTGATCAACACAACATCATATCGGACACACAACACTGATTCCGTAAGCGATGATCTTACAAGACCCAGCTGATCCAAACCATTGATGATCTGGCTTCAGCACGGCTGACACTCACCAACTACAACAGGACCTCAACACTTTGGAGGAATGCGAGAGGAAGTGGCAGATGAGCTTCAATGTATCAAAGTGTCATGTCCTATCAGTCACAAAGAAGCGCAAGCCTATCATAGCAACCTATTTATTTCATCAGCAGCCCTTGGAGAGAGTCACCAGCGCCAAATATCTAGGTGTAGAACTGACCGTTGACCTCCACTGGGGAAAACACATACAGACCACCACTGCCAAGCAAAACCGTACAAGCGCTTTCATATACAGAAACCTTAAAGGGTGCCCTCCACAGGTGCACTCACATTGCTACAAAGGAATGGTCCGCCCCGTGTTGGAGTACGCCTCTGTCGTGTGGGATCCCCACCAGCAACACCTGGTAAACATCATTGAAGCCGTCCAGCGACATGCCGCGAGGAGAATCTACCATGATTTTAACCACTATACCAGCGCCACAGAACTTGTAAACAGACTACAACTGCAGACCCTCCAAGAAAGAACAACTGTCAACGAGGCAACCTTTATGTACAAGATAATGAGTGGACTTATGGACAGCATGCCAACTAAGGGTGCACTGACAACAAACAACAATCTCACCAGGGGACAGCCCAACAAGCTCCTGCCTTACACCAGAACAAACATGTACCTCCACTCCTTCTTCCCTTCGGCCATCAGTTTGTGGAATAAGATCCCCGACAAAGCGTCCTCGGCCCGCCCCCTCACAGCTTTCAAAGCGGCAGTTGATGTAAAAAAATACCACCTAGATGCACCCTCTTCAAAATCAAACAAAAAATACTGTTTTTATTAGCCTTTTTTAAACTGTTCATGTGCGAACTGTGGAATATTCCCTGCATAGAGGTAACCACAAGATTGTGAAGAAGAAGAGTGGAATACTCGTCCATACGTCAGTTCATGAAGATATTGCTACTTTCATTCGTACACACTCTTGGGTGTATCGCTGTTTGTCCACACTTGGCCTTCCAAGTTCTTTGTCTCCAGCCTCAGTATTGCAGTTAGCTGTTGATGTTTATAAGTATAAGTAGTTTATTTACAGTCCCACTGCCCTGGGGATGCCTAGTTAAAAATGTATAATATAGTAGGAATCAATTGATATGATTTTTATTTTCCATGCTCTAAGTGTTGTCGTCTTAAAAATGGTGAAGTTGGACACTCAGGGGAAGAACATATCTGCACGTGTACAGACATGCACACACATGCAACACACATGTACACACACATGCATACATGTACATGCATACGCGCACACACAAAACATATGCACGTTCACACACACAACACCGAGTGTTTAAACACTGAGAAATCCACACATATGTTAATATGTAAGACTTATGTAAGCAGAGACACTACATGCTGCCTGTGTTTGCTGCAGCATGTCGACATGACTAACGCCTACCTGTGCGGCTATCTGAAGATCGCAGGCCTAACGGAGGAGTATCCAACATTGACAACATTTTTTGATGGTGAGATCATCAGCAAGCAACATCCTTTTCTGACGCGCAAATGGGATGCAGACGAAGACGTCGATCGCAAACATTGGGTGAGTTTTGCAACATCACTATGTCACAGCTGACAACACTACCAGTGTTTCATAATTATGTTCTATCAAATCATACTGAGTTGCACCTAGCAGTAGTAACTATAGTTGATTGTGTGGTAGTTAATTTATTGACATCCATTTCTTCAAAGCATCTTTCTCACGATAGTGAGTTTGCCAATACAACATTGTGGATGAATAAGTCCATTACACACAAATTTGCAACATTTTATTGGTTGACATCTGTATTTTTGACTAGAAACAATTTAGAGACAGTATAAAAAGTCAAAGAAACCGTAAATAAATCATTAGTAGACATTACTTCACAAGAAACGTAGTGTAGGTTCTTAATATTTTGGTTGTATCGCACAACCTTTGTAAGTGGACTGGTTGCCTTCGCTAAGGGCTTGTCACATGACCAGCAGCATCATGTGACACAGGTTGGAACAGAAACTGATACATCAGATGGGAGCTCCCACCAGTACTTCTCCAACCTGTGTCACAAAACGCTGGTCACGGGACAACAATGGACTACAGCTCATTACAACCCTGTCCAGTCAGTACATTTCCCTATTACTTCACCTTATGGCGATCAACTTCTTTTCATTGTAGTTTGCCAAGATTTGTACAACTGTTCTTTGTTGATATGTATCAATGGGGGTCAATATAATATAACAATAATTGCATTGTTATGTGTTGCTATTGTAATCACATTAAATCATACTATTGTGTCTTACAGGGGAAGTTCCTGTCTTTTAACTATCAGTTTGCAAAGCGCTTCAACACGGATGACTTTGACTACAATGATCTGACGGACACAGACTTTGTCTTCATGCGGTGGAAGGTCAGTGGCTCCTGTCAACTTCTGTCATAACGTCAAGTGTGTCATGGTGGCAGTGTCAATGGTCACGTTTGTCACTGGATTGGTTGTCTGGCTCTACTGTCTTCACACAGTTCTGCCATCAGCACCCACTGCCAGAAGCCCAGTATCATGTCTTATCTGATCTATCCACCACTTCAGCTGCTTTCCTCTCTTTCACTAGCCTTTGACATCTTGCTTGAATGTTTGACTTGACTAATGAGATTATCTCTTGGCATACAGTAAACTAATAAACTAAACCTGTCCAAAATATCAGAGTCGAATCTTATGTATCTGAGATGTATTCACAATTGAATGTGTCCTCTCTGATCTGCCTAATTTGCAAACTGCCATGGTTGCTCCAAGTGACCTGTCCCTGCATGCCCTTGCTGCTGTCAGTTGCATGTCCTTATTGCCCCGACATGTTTTTGTTGTTCTTCATTGTATGTAGTATTGTTGTGGAAAACTTGCTAATCTGCAGACTGTTCCCCCAGACACACACAGTGGGCAACGTAGATTCCACTGTAAACAAACTGCTACGTACATGACTGTATACAAGATATACTGCTATGTACATGACTGTATACAAGATATACTGCTACGTACATGACTGTATACAATATATACTGCTATGTACATGACTGTATACAAGATATACTGCTATGTACATGACTGCATACAAGATATACTGCTATGTACATGACTGCATACAAGATATACTGCTATGTACATGACTGCATACAAGATATACTGCTATGTACATTACTGCATACAAGATATACTGCTATGTACATGACTATATATAAGATATACTGCTATGTACATGACTGTATACAAGATATACTGCTATGTACATGACTGTATACAAGATATACTGCTATGTACATGACTGTATACAAGATATACCGCTAAGTTCATGACTGTATATAAGATGTATAAACAGATGTTGATGTGGTGGCTACTGTTGCAGGAACACTTCCTGGTGCCTGACCACACCATCAAAGACATCAGTGGTGCATCATTTGCTGGTTTCTATTACATCTGCTTCCAGAAGTCTACAGCCACGATAGAGGGCTACTACTACCACAGGAGCTCAGAGTGGTGGGTTCTCTTCTCAGGACATTTACACAATTTTACACCTTGGTGGCAGCCGACAAAATTGCATTTTTCCATGGATTCAATGCCAGAGTAAGATACTAAGAAAGGTTTATGCCTTCAGCAAGACTCAGGTACTTTTGTACACCACATGTTGGTATGAACAGATTAGTGAAAACTGAAAGAAGCTCAATCTTCTAGTTCTAACAGTATTTTTTATTTTCTAAATTAATTAGCAATTGTTTGGAGTCTAGACAGAAATATAAAGTTACTGCTTCTTGTAAACATTTGATATATTAATAGTATTTTAGTACATCTATCAAATGCACTTGTGTTTGATTATGATCATTTTCTAAGTAGCCATTAGCCGTTTAACAACTAAACATACAATATTTAATGTCTGGTTAAACAAAATTTACTGAAATTGTGACATGATATAATTTGGCCAAGAAAAAATAATTACTTAGCAAAATGGCTAAAAAAAAAATACAGTAGTGAGTCGAGCTCGTATTATCAAGCTACTCTCTATCAGGTTCCAGTCTCTCAACCTCACTCACGTCCCTGAACGCAGCGTCGGCGTCTATGAGTTCCGATGACATCCACATGCGGCAGCACTGTCCAGTGTAAGAGACAACTGCCACAACGCTGGAGGCAGACAGTCCTGCTTCACTGATGCCACAGCGCTGGAGGCAGACAGTCCTGTCTTACTGATGCCACGATGCTGGAGGCAAACAGTCCTGCTTCACTAATGCCACGATGCTGGAGGCAGACAGTCCTGCTTCACTGATGCCACAACGCTGGAGGCAGACAGTCCTGCTTCATTGATGCCACAGCGCTGGAGGCAGACAGTCCTGCTTCACTGATGCCACAACGCTGGAGGCAGACAGTCCTGCTTCACTGATGCCACAACGCTGGAGGCAATCAGTCCTGCTTCACTGATGCCACAATGCTGGAGGCAGACAGACCTGCTTCACTGATGCCACAATGCTGGAGGCAGTCTGTCTCACTGTTGCCACAATGCTAGAGGCAGACAGTCCTATCTCACTGATGCCACAACGCTGGAGGCAGACAGTCCTGTCTCACTGATGCCACAACAAGGAGGCAGACAGTCCTATCTCACTGATGCCACAACGCTGGAGGCAGACAGTCCAGTCTCTCTGATGCCACAACGCTGGAGGCAGACAGTCCTGTCTCACTGATGCCACAACAAGGAGGCAGACAGTTCTGTCTCACTGATGCCACAATGCTGGAGACAGACTGCAGAAGTCACGACGTGACAGTGGCACAACTCACAGACTGTACAGCAAACACTGCATGTGACACCCACAGCCAGACTTGTATTCTTAACCAATGTGTTCACGTTGATGTGTGTCTATGTGGAAACACGTTTTAACGCTGCATGAGCAACCTTTACAAAGCAACTGTGTGTAGATTGACTGCTATGGTGAATCTGCCACAGATTATACCAGACAAGCATGTCTCGCCCTCAATGACACAAGGTCATAGCTTTTTGACAAATAACGCTACTTACACACAAAAAGGAGGATTCAGGGCATTATTATACGTCACTGCATTAGCTCAAATGTTTATTTATCTGATATTATGCACACATTTTCTCATATCAGAACTGTGTTCAATAATCTTGAATATTTTCCAAGACAAATCCACCTGGGTTTTTAAATATGGATTAGCAAAACATTCAAATGAACCTTTGAGAAATTCAGGAAGAATCTAGATTGTTTTCATCAGGACAGTAGTTACACAGGTAAGGGGTCAAGTGCTGAAACATATTCCTAGGGGAATTTAAACACACTGTTGTAGTAGTGACTAGTATTGTGTTGTGATCAGCAATGATTGTTGCAGCTGTTTGTTGTGAAGCACTGAAGAGATTGGACCCGACAGAGGCTGTGTGAAGTCCGGTGTACAGCATGTTTGTCTATGTCTGACTTGTACATAGAAACTTGTATATTTGTAATGTTGTTCTACCAATAAAGTGTTGACTCTACATGTAGTAATGTGCCAAATAGGAAGTATTTTCATTGCGAACTTGTGTCACTAAGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09783	Vac_ImportDeg	Vacuolar import and degradation protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018618	Family	Vacuolar import/degradation protein Vid24	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14534	VACUOLAR IMPORT AND DEGRADATION PROTEIN 24	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006623	Biological Process	protein targeting to vacuole	Interproscan
GO:0007039	Biological Process	protein catabolic process in the vacuole	Interproscan
GO:0034657	Cellular Component	GID complex	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0045721	Biological Process	negative regulation of gluconeogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf4774_3.13 global RNA-seq network