Gene detail

Detailed information of PE_Scaf4671_12.10 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf4671_12.10	LEO1 PROTEIN	Superscaffold2	72252155	72257742	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf4671_12.10

GTGTGTGAATGCATGCATATGTGGTGTGTGTGCATGTGTTAGAGTCTGCCACGTCGCGTCAAGTGTCCATTCTATCTGTCCTCCACTGTAGGAAAACAGGATCTTGTCGACTACTGGAGCAACAGTTTTTCACTAATATTTTAGAAGTCCATATTAATGTTTTGATTTTCAGCAGGTTTTTGTGACGTGTGCACTTGTAATATATGTATGTATGCACATATACCAGTATCGCCTGTATGTATACCTCGTGAATGTGGACATGATGGTCTCCGGTGTATATGGTTTTCTGGATAATGAATCACACACATAATAAGTCAAACCAATATTTTTTAATGTTTATGAATTCCATTAATGTGAAATGGATGTTTGGATCCCAAGATTTCCAGATCACCAGAATCTGGATTAATAAAATGCCACTTTAGGAAAGGTTAAACATCTTCGGTGCTCATTAACAGATGGTTTAATGACTGGTGATTGTGGCGTGTTTGTAGACCGTTTGATGTCAACAACTACGAGGATGAGATTGATGATGATGACATCTTGGACGAGGAAGGCCGGTCAAGGCTCAAGCTCAAGGTGAACTCTTACAACAACATTTAATATTATCATTTTTATGTAGCAGATATACTAACATATTAACTGTCATGATGTTTGTGCCATGAAATAAAAACGTGTTGATCATTGTTCTTTTTTACTTATTTACAATGTTTCCTTTGGTTGCCTTCTTGAAGAACTAAAATGTGGGATTAAGTTCTTCTGCTGGCCAAATGCCTCGAGTATTGTCTTAGGTCAGCTTTAGAATAGGACAGCTAAGACAATCTTGTCTTAGGTCAGCTTTAGAATAGGGCAGTTAAGACAGTCTTGTCTTAGGTCAGCTTTAGAATAGGACAGCTAAGACAGTCTTGTGATCCAGCGGTTGATGTGTTGTTTTTGATAAGATTCAGGGAAATACCCAACAATTCTCCAATATATTATTATTGTTCAGAATCTACTATACTTTGTTCTAGTCAGGTCAGACTGGTTGTTATTGCATCATGCCTACTAATACAGTCCCTTTGATTTGGCATTACGTCTTGACCTTTGACCCCAGGTGGAGAACACAATTCGGTGGCGTGCAAGGAAGGATGAGGAGGGTAACGAGATAAAGGATGTGTTTGGGGACGTGGTACGGGAGAGCAACGCCCGTGTGGTTCGCTGGTCCGACGGCAGGTAGGCTCAGGCTTAACCCTTTACATGCCATGACGCTCTACTGAAATGCACTCTGATTTCACCAGTGCTTGTACACATTCAGTGAGATAATGTTTTCAAACTGAGATAACTCAAAACAACAAATGAACTTAGATTTAAAATTACATATATTATGCTTTATCCAGTAGATAGCACCACTTGTATGAGGCATTAAAGTTCACAGGAATTGTCACAACATTTGTATATATACATTGTATCACAGTTTCTATAATAAACTATCATACTGTGTATCCTCTTTGTCACCATCACCATTATCAGTGTATGAGTAAGGGGATGAATGTGCGGGAATATGAGTTATATTTATTTTATTATGACTGCCTTTTTATGCTTTATGTACTTTTTTTGTATTAACAGACCACAAGACAAAGTTTTCTTTTGAGAAATTCAATAATGTATCTTGTATCATCTATAATTTCTATAATAAATATTATAAAAATCGTCAATCATTAACTTTTCACGGCATTATGTCCCGTAGTTAAATATCCCGGAATTTGATATGTGATGGGCAAAATCTATTGATGAGATAGTTTTACGAGGTATTATCCTACATTTATTCAGTGGTGCTACAGCATAAAAAATATAGCACCATTTCACCTTTTACATTCCTTCAAGAAAACAATCCTTGTTGGCAGGTGATTCCAGAAAGATGTGAAAGTAAACAATTTGATGCAAAAATGTGAAGAACTACGAAAGATAGCCAACTCTGTTAATGTTGTGACTACAGTTGTTAATGTCATTAAACACGACACTTGTCTCCCTCTTGCAGTATGTCCTTGCACCTGGGCAACGAGGTGTTTGACATCCACACGATGCCCCTCCAGGGAGACTACAACCATCTGTTCATCCGCCAGGGTACCGGTCTCCTCGGCCAGGCCGTCTTCAAGACCAAACTCACATTCAGGTAGCTACGGGCACCTTGTGGTGCTCATTGTGTCCTCGCCTCAGACTGGGTGTGACATTAGTGTGATAGTTATGTGCCCAACAGAATTGCACATCAAGAAACTGTTACATATATGTTATTACCGCATAGTCAGGTATGAAGCCAGGTATGAAGTGGCACTGGTCTGTTCTGCTTGTGAGCCAGAAATAGCTGTGTAAATTATGTCCCGTCAGTTTTGTGATTTTGGCAGAAATGTGCATCTTGTAATCTTATCTTTCAATAGCCAGTTTATTTTCCTCAACAAATAATCCAAAACTAATACAATACTAAATGTATGGTTGGTATCAGTAAAAAAAAAGGTCTCATTTTGAAGAGTGTAAGTGGAATAAAACTGGCACTAAACTATGTTTAGAAATTTTACTGCTTAATACCCAGTCAGGTTACAGATACACATTGTAAAATTAGACCTTGTAAAATAGACTGCACTCTGTAAAGGTGGTTGATTATTGTAAACATAACTGTTATGGTCTCTGAAACTTTCATATTTAAACATATAGAATTGTTTTGGTGATGTTGACCAGTTGACAATATCTACTTGCGGTAGAAACACCAAAGTTGATATTTGTATAAATTTCAGGCCACATTCAACCGACTCCTTCACACACCGAAAGATGATGATATCGCTGGCGGACCGTACAACTAAGTTACAGAAGGTGAAAGTGTTGCCAATGGCTGGCCAGGATCCGGACATGCACCGTACAGAGATGATCAAGGTAGGGTCATAGGGACTTAGACAAATAAGTGCAGCTCCCTCGGTGCCGACATCCACACGCCTCTTTCCGTGTTCGTTCTCTTCCATCGACAATAGTTCTCGCATTGATGATGTATTTAAAACAAATACAAAGATAGTATTTACATTTTTTTTTCATTTTCTTTCAACCACTTAACTGGTCAGCCATTCCCTGGGAAAATGATTGTCTGCTGCGTGCAATTGCAATGACAGCAGACATTATGTGGTCAGTGGGGACGAGATTAAGATCAAAATGTTGTAATGATGATAACAGTTATCCTTTTATGTTTTTCTTCTAATGGCTGGTCCAAGCACCGATGTTACACGAGGTGTATGTTTGGGTTGTGTTGGTAGAAAGAGGAGGAACGTCTCCGTGCGTCAGTGCGGCGGGAGAACCAGCAGCGGCGGATGAAGGAGAAGGCATTGGCACGGGGACTCAGCTCCTCCTATCTGGAGGGAGGCGGGGAGGACGATGATGAGGAGGGGGCTGGGGTCTCTCTCATGGCCATCAAGAAACAGTACAAGACCAGTCTCAAACGTAAGTGGTGCGGAGGGAGAAGGGGTGACAGTAGTGAGGGTTGGAAGAGCAATGAGTGGGGGTCTTTAGTCGGAAGAGGGAGGTGGGCAATAGAGGGCATTAGAGGAAGGGAGGGTGTTAGATGAAGAGAGGGCGTTAGAGGAAGGGAGGGCATTAGAGGAAGAGAGGACGTTAGAGGAACGGTGGGCGTTAGAGGAAGGGAGAGTGTTAGAGGAAAGGAGGACATTAGAGGAAGGGAGGGCATTAGAGGAAGGGAGGGTGTTAGAGGAAGGGACGGTTTTAGAAGAAGGGAGGGCATTAGAGGAAGGGAGGGTGTTAGAGGAAGGAAGGGTGTTAGAGGAAGGGAGGGCATTAGAGGAAGGGAGGGTGTTAGGGGAAGGGAGGGCATTAGAGGAAGGGAGAGTGTTAGAGGAAAGGAGGACATTAGAGGAAGGGAGGGCATTAGAGGAAGGGAGGGTGTTAGAGGAAGGGAGGGTGTTAGAGGAAATGTGGGTGTTAGGGGAAGGAAGGGTATTAGAGGAAGGGAGGGTGTTAGAGGAAGGGAGGGACATTAGTGTAGTGAGAGAAGGAAGAAGAGAGTAATATTGCAGTAATACAACAAGCATGCAGCGTGAATCTGTTAAGTAAGACGCCATCCTAATGAGACCTGTTGGATGTTGGTGATGTTGTAGAGCCGCGCCCCAACATTTACAGCTCCGATAGTGAGGACGAGTCTATGAGTGATGAGGAGAGGAAGGCCAAAAGACTGATGAAGGCAAAGAAACTGGAAGACAGTGATGATGAGGTACGTCTACGTTCATCATATATGGGTGGTCATGGGGGTGTCTGGTGGGTGTAGGATGCGTAGAGTGGATACAGGAACCTGCTCTCAACCCAGCAAAACTTAAAGCTTCATAAATGTATGTAAAGTTAGAACCCTTAGATACGTAAACGTAAAGGTTTCAGTCTTTCAGATATGTAAATCTAAAAGCACGTAAATCTTCAAATATTTAATCATGAAAGCTTCAAATATGTAAACATAATAGCTTGCACAGTGTTATTTGTCCTATGAATATAAGAAAATAAATGATGTGAACTTTTTATGTACCCTCATAATTTGTCATGAAACACTGCAGCGTTTATATTTCCTCTTGCAGGATTCTGACTCTGATACAGAGGTGAAGAAGAAGAAGGCAAAACTGATGGAGGAGAGTGATGATGAAGATGAAGAGGAGGCTCAGGAGGCTGAAGACAGTGATGACTAGTACAGTGGCTGAACGAACTAAATAAACAGTTCCTTCACTGGTGAAGCAGCTTGCCCGCGTTCATGTAATCTTCTCACTGTCTGTGTCCGGTGAAATCTGTCAGTTGATAGATTGGTGTATGTTTCTATTCCTGGTATCGCTGGATGTGATAGACACACCTACAATGCTGTTGATTGAAGACAACACTGGATTTCCTTCGGCTGACAACATTTATAATTTTATGGAATGGCCATGTCACACGTTGAATGTAGAAAAGATATCGAGCCACCTATCCTAGAGTTTCTGTCAAGGAAATGCAGGGAATTCATGTAACATATGTGTTGTATAAATTGATCATCTGTGCTGTGTCCTTGGCTGTGACAATTCCAAGAGAATGTGTGAAAAAGACAGCCATTATTGATTGTTGTCTGGGTTCACATTTATCATGTGACATTCCTTGACAGCTCACACTGGCTTATATGTGACACTGTTGATCCTAGCATAAGTCATGTTACAATCTGAATTGACTTACAAAACAGAATGTTGCATAGAAATGCAATGGTAAATAGATAGGTTTTAATGTTGTCATGTATGACATTTCATCTCGCATTTTCATAATATTATTGTAAGACTGCAGCATTTTCAGTGTTCAAAAACAAAATGTTTGAACAGGACTGAGAAAATGGTGTTTTACAATTAAATGTCTGATGTTTTATATATAAAAATATAAATGTGACAAAGTTCTGTTGTGCTTTCTTGGTAGAAAACCCAAAAGGAAGCATAATGGCAATGAGAAATTATTGTTTATAGTGTTGCACTTTAATGTAGTGTTTTCTATTAAGGAAAGTACACAGACAATAACCAAAAAGTGGTGGGTTAACACAGCAAGGAGTAAATGTGTCAGTGGCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04004	Leo1	Leo1-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007149	Family	Leo1-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23146	LEO1 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0032968	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:1990269	Molecular Function	RNA polymerase II C-terminal domain phosphoserine binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf4671_12.10 global RNA-seq network