| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| PE_Scaf4548_8.26 | UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN | Superscaffold12 | 5067613 | 5083290 | + |
| CDS | |||||
| PE_Scaf4548_8.26 | |||||
| Transcript |
| PE_Scaf4548_8.26 |
| Protein |
| PE_Scaf4548_8.26 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03467 | Smg4_UPF3 | Smg-4/UPF3 family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005120 | Domain | UPF3 domain | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR039722 | Family | Nonsense-mediated mRNA decay protein 3 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13112 | UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000184 | Biological Process | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003729 | Molecular Function | mRNA binding | Interproscan |
| GO:0005730 | Cellular Component | nucleolus | Interproscan |
| GO:0005737 | Cellular Component | cytoplasm | Interproscan |
| GO:0045727 | Biological Process | positive regulation of translation | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
| 1. Expression trend for PE_Scaf4548_8.26 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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