Detailed information of PE_Scaf4540_23.5 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf4540_23.5UBIQUITIN LIGASE PROTEIN CHFRSuperscaffold92480056924828672-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00498FHAFHA domainFamilyInterproscan
PF13639zf-RING_2Ring finger domainDomainInterproscan
PF17979zf-CRDCysteine rich domain with multizinc binding regionsDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000253DomainForkhead-associated (FHA) domainInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR008984Homologous_superfamilySMAD/FHA domain superfamilyInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR040909DomainE3 ubiquitin-protein ligase CHFR, cysteine rich domain with multizinc bindingInterproscan
IPR052256FamilyE3 ubiquitin-protein ligase CHFRInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR16079UBIQUITIN LIGASE PROTEIN CHFRInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0007093Biological Processmitotic cell cycle checkpoint signalingInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf4540_23.5 global RNA-seq network
TOP