Gene detail

Detailed information of PE_Scaf4540_16.18 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf4540_16.18	60S RIBOSOMAL PROTEIN L6	Superscaffold9	25130332	25136291	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf4540_16.18

AATAGATGTGCTCATCGGGCACCAGAATCTCTCGGAGAAACTGACCTCGGTTGACACCATGTGGCACCATTAGGCAGCCAATCGGCGGTCTCCATCACCGATGGAGTGTTTTATATTAACCGTCACCGATTGATGTTAAGCACGTTTCACTGCAATAGCACGTGAGTTTTACAAAACTCACTGGTAGTCACACTCATACATATCCCCATATCCGAATAAGTTTATGTGATGACGATAACATTTAGTGTCAAAATCCCATTTGGAAGCCACTTGAACCCGACGGTGCACTTAGTGACGTATTTAATGGAATGTGGCTGGAGGAGACTATACTGTATTTCATTCTAAGTACAGTTCTTGTGGCAGGTCGTATGCTATAATATCACTACATACAATGCCATCTGATATGGGCATAACTATGTTTCTGTACTAATACCATCGCCTTGACACTCATCATGCATGACGTAGTCTACCCATCTACACAGTCGCCAATTGGTCCATTTAAAAGTACCGTCGGGCCTTCCCGGTTTCACTTGGGTTACGATCTTTTCACTTTGGCATCAGCTAGTCTATTTTGTAAACAATTTGCACAAATAAGAACTTCAGAAAAGTCTGCACGCCGTCACTCCAAGCGTACCTTTGTGGACTTCTTGTGAAGCAAAACTATGTTTATGCAGTAATTGCAGTTTTATGTTTTTCCATGAAGAAGTCTGAAGTAAGAATATTTTAACATGCTTATTTCTTTGGTTGTTAGTTTTTCATGGAATTTATTGACGACACACTGCAATATATATGTTATACTGGCTCCGACTTTAGAATAAATTTTGTCACTTACGCAGTGCTAGTATTTCATTAATTTTTTAAAATCCGTGTGCATCTAATTTTTTATGAAAAACACGTCACTGATGCTGATAAAATGTACAATTTTGACATGTTAGGCGTTGTTTTCAGCAATGGCTCCTACAGGGGTGAAGAAAGCGAAAGTAAAAGCTCCTCCTGCTGTGAAGAAACAGCGGGAGCCAGCGAAGAAGCAGCAGAGGCCAAGTCGCATTGTCACCAAGCAGATTGGTGGCGATAAAAATGGTGGAAGCCGAAAAGTTCGCGTCAGTCGCATGGTGGGTGTCCGCGGTTTCTCTTGAATTTGAAGTTTCTCTTGAGGTCTCACGTGAATTCTTCCACCCATAATAATTACACAGAATCACAAATCATTTTCTGATACATCAACTTAGGTGTGTACTTAGTGATACTTTATAATATGCATGGTGAAACAGACAAAATATTTGGGTAGAGTTGTCAAAGAAAGCACAGGTTAAGGACGAGGTGACACCATGTTGTGGTAGGTAATATGTAGATCTGGTCAGAAGGACACATTGTTGATGTCTCCTTTGTTGCCGAAGCCTGGGATGAGACTAATATCAATACTGTTCCTCATTTTCCTTCTGTGACTGATCCCGCTTCAAGTATATCTTTTATAAGCATAGTGCTGCTTATATTTAGAAGCCATCAGTCGTAATTGAAACATCGAGCTGTTACACTTGAATTGAACAAACATGCGTTCCCATTCCAGCCCCGTTACTATCCAACGGAGGATCGACCCAAGAAACTGCGCAACCGCAAGAAGATCTTCAGTGAACACAAGCACAAGCTGCGTCAGAGTATCGTTCCTGGCACGGTTCTCATCATTCTGTGTGGCAGGCATAAGGGAAAGGTTTGTAAAATAGCACAACATTGCACATCATTTGTTCATAAATATTTTCTGGTCCTAGTAAATGTCAGATTATTACAGTTCTTGGTATTACAATGGATTTTTCTTGCAATCAAAAAAGTTAACTTTACATCTTTCAGAGACACAGATATAGGAAATATTGAAATGAACAACCGTTGGATTTCATACAGCTGCATTATGACATGAATAAATATGACAATGGTTTTTAGTCCTTTCGGCTGAAGGTCCAACGGACTTATGCCATCACTCTGCGTGCGCCGTTAGCTGCCACATCTCAGAAACCATTCAGCAAGTTTTTCTCAAATTTTGCATAGACGTATCTTAGGGTACTGCCAATATACGTAATAAATGTGTATTTGATTGAATCATTCTAAGGGCACCTCAGGGCCCCCCAAAATGTTCCTAGTATTTCCCTACTGCTATAAATCTCCTACACTGATCTCTATTTATAATTTAGGTCTGTGTGGTTAGCGAACCACTGGCTGGTGTGGTCACTCATGGCCACAATTTATTGTTTTGTTGGTCAGTCTTGGTGTGGCCAGGGCTGGGCTGTTGTTTATTCCCCAGTGTGGGAGAGTTGAGTGCTTAGTGGGTGAGACATTCTAATGTACACCTTTTGTACCATTACAGGTATAATGATATAATTAGCTAAGAACAAAATTTCTAATGCCATACACTCAATATTTCCATGCTATCCATGTGCGTATGCAAAACCTTCACAGTCATGTGTTATCATTTTTTGTTTACACATAAAGACATAATCTAGAATAACTTGATAAGTCTTTGTAGCTGCACATTTGTACTTTCAGTGTATCATTGTCAAATTTGAATGTCATGCATGTAATATTTCCATGCAATCCATTTGCATAAATAATGCAACAGTCAACAGTCGTTTTCTTAATTTTCACTTTTTAGATGCCTACCATGTTCAGTGCTCCATAACATCGCCAATTGTTGTAGCAGTCATTATTTTTTAAACCTTGTAAAACACCCTACCCAACCTTTACAAGAATGTAAGTAAGACTAGTAATTTTGCTGTGAAGATGTCATTAATGTGAACTGTTATGTTGCAGCGTGTAGTTTTCCTGAAGCAGCTCAAGTCTGGTCTGCTTCTTATCACTGGTGAGTAATGCAGTCATCCCTACATTACAATGAAAGAAGGCATAATCAACTTTATGCAAGCAACAACACGGAGACAAATATAGATATGAAAAAGGCCAAATGGATGACGTTTGTTTATTATGGGTAACCAGTGTATAAGCCTTTTTGGCACACTAATATTTAAATAAAAGAAATGTGGACTCTACAACCCAATGCCAGGCCTGTGACTGAGCCCATACTAATCTCCTGAACATCAGGCTGTTAGAGCCCACATTTCAACATATAAAGCAGCAGCGGTATTCCTAGAACAATTGAAAGGAATGACATGTAATCACAGCAGAGCTTGTTATGTGTAGAGTTAATTTTAAAGCCAACATGATTAACTAAGCCAACATGATTAACTAAAAAGTGCCTTTCTGAATACCACGCTATCTGCTGCCAAAAACACTAAATCTAAAATTATACTAATACCAAATGTGGGGGTATTTAGCCCCGATATATACAATTCCATACTATTCCTAAATCGAAAGTGGAAAAAGGCATGCAACATCTCTTGCAATAAAACCCTGTGAACACATCCGGTGCAAACCCTATGCTCACAATCAATTATAAATGTGGGGAAAGCATCGAGACCAGCAACCCCCTTCCAATAACGATGCACAAATCATGACTATACATCAAACATTCCTGGACGAAAAGTAGGGAGGCGGGTGGGTCAAATTAGACAAACGTCTGCCCCTTTATGCTTTCGCAAACGGAGTGCGGGATCAGCTTAGGATTCTCCCGAGGGACGCGCGCCAGTGCGCGCTGATTGGTTGATTTGATTCTCCCCACGGGAGTAATTAACACGTCCTTGCATAAATTAGCCTCCTCTAATGGGAGGCCTCCGTGTGCTGTTGTCTTGCACAAAGTCCAGTATGCAAATCGGCTGTGCCAGATGTGCACACCATCATATGTTTCCAAAACAACCGTATTGAGATGTAAAATAGTGAGTTTAACAGTGCATACTATTGTCAAAACCATTAACTTTGATAGTTCGATCGGGTAACTAGTGAAAGTGTGAATAGTGGATAGAAGCAGACTACAAAAAACAACTTCGCTCTTTTCACAGATGGGCTGTTCGTACCCCGAAAAAAAATAAAAATAAAAAAGTTTGTGCTGGCATCAGATCTGGGTTCAATTCATTTTTATTAGTTCAATTCCGATCAACAAAGTTCTTCAATTAAGTATAAGTCAGAAAGTCCATAATAAAATGCCTGCGTTGTTCTCAGAAGAAACAGTGCTAAACGGGACTTGTGCCAAGTACTGCAATCTGTGTGTTCTGAAGAAGGGTTATGTTGACTCTAGTCAGACAACCTGCACCAGTGTAGTGTGGTACCATCTTGCAGCCTGGCTAAAGAACAAGGGGGGTTGCTGAACTCTGGACATTGGCAATTGCTAATTCATCCCTTCAGCAAACAATAATTTTTGTCTGGTGGTCAATTAGCACTTAGCAGCTCTGTTCTGTGCTGCTTGCGGGATTCAATTCCAGTTCATTTTGTTTTTATCCAATTCAACTCGTATTCATGCATTTTTTTGATCAATTCAATTGCAATTCAATTACACATCTAGCCCGGGTCTGGTTAGCATGTCATAAATACAAGACATGAGTCCCAACTTGTGCTTCAGTGCATATTTAACTGCATGGTTGTTGTTTCTAGGCCCCTACCACTTGAATGGATGCCCTCTGCGCCGCATCAACCAGATCTACGTGATTGCCACCAAGACGAGGTTGGACATTAGTGGAGTGAAGATGCCGGAACGCGTCAACGACGAGTACTTCAAGCGGCAGAAACTGAACAAGCCCAAGCACACAGAGGGCGAGATCTTCGACACGGAGAAAGCTGTAAGTAGCGTCACGTTCGTTGTCCATTATCAGGTTGAATATGATAATTAATGTTTCCAGTATGTCACTGCTTGCGTACAGCGTAATACAAATTTTGTGTGTGACCTCCGTCAAGCTTTGCCACCAGTTGATACTGGTTATATACGTGAATTACATTACTACAGCAGCATGTCATTAAAAAATTGTACATTCCCATGTACAGATGTCACTTTAAAAACTTAACGTTACTTTAGAGACCAGAATTTCACAAAAATATACGACAGTCTCCAAATCCACCACGTGTTCAGCATCCTTTTTTGACGACTTGATATAGTCTTTGCTAGGCAACAAATCGTGATGGATAGGTCAATTATCCTGCTTGTACAACAGTGTATTTGCAAGTTATCTCGGTATGAAGAATTACTTCATCATGAAATAGCATACATCCACATGTATGTGGTTTGAATTTCAAATGATAGCAAGCAAGGAAAGATTACCCACCCATACAGCCATACAGAGCTATTTTTATAGCCTCTTCAAAATTACTGGAATCTTGGTGAAATTTTGGATGATTAAGATCATTGACATTTGTCCAAATTGACTTGGATTGCCACATGTCTGGATTCCCCACAGGAATTTTTTGATGTATGACATCCTTGTTTGTAAGCTGTGTTCGGAAAATAATTTTTTTTGGAAATACGTTGATATATAATACAAAATAGCCACTAATGTCCTTTCTCATGAAACCAATTTTGTGTATTGATTTTTGAGATCATCCATAGAAAAATGATGGATCTGCTACATTACAGTTTGCCTGTCACAATCAAAATTATGTGTGGCCTCTATCTAGCTTTGTCAACAATGTTGATATCAGTTATATATATTCTTACATTACCAGTTATGTGGCGTGACATCTTCTAAATGAAACATTCCCTCATACAGTTGTCACTTTAAAACTGTGCCTTTTTTGTCATAAAGAAAAACTTGCGGCCATAATTTCGACAAAATGTACGTGTTCAGATTAAATTTTTTGATGGCTTGACGGACATTTTGTTAGGCAACTGGACACATGATGGAAGTGGCTATACATATATTGGTCTTTTGTTGCAGGAGTACAGTGTAAGCGCTGAGAGGCGAGAAGACCAGATCGCAGTCGACAAACAAGTCTTGGATGTCGTTCGGCAGAATCCTGAGAAGAAATTCATGTTTGGTTACCTCGGCTCCATGTTCTCGCTGACAAACAAACAGTACCCTCACAAGATGATCTTCTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01159	Ribosomal_L6e	Ribosomal protein L6e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000915	Family	Large ribosomal subunit protein eL6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10715	60S RIBOSOMAL PROTEIN L6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0002181	Biological Process	cytoplasmic translation	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022625	Cellular Component	cytosolic large ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf4540_16.18 global RNA-seq network