Gene detail

Detailed information of PE_Scaf4510_17.13 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf4510_17.13	XANTHINE DEHYDROGENASE	Superscaffold8	3629129	3632333	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf4510_17.13

GTCTGACCAACACACCTGACTACCTGACCAACACACCTGACTGTCTGACCAATATGCGTGACTGTCTGACCAACACACCTGATTGTCTGACCAACACATCTGACAGACTGACCAACACACCTGACTGTCTGACCAACACACCTGACTGTCTGACCACCACACCTGATTGTCTGACCAACACACCTGAATAACTGCATTTACATCTCGCCAATATGCTAAATAGCCTACCTGTCTGACCACTACCACTGCCTGGCTAACTACCTGGTCTGCCGTTCCTGTTACTTGTAGAGTACAAGACTCGAGTCTACGTGGCCATCATTGAGATGTTGCGATGGTTCGCGGGGAAACAAATCAGGAATGTTGCAGTAAGTGTTTCTTTTACAAATTATATATACTACTGTACAGAATTGGGCCCTTACTACATGACATTGATTTCACCTGTATAAGTAAAAGCACATTGTCATAAACATCGGTAGTATTACATTAACATAGACTTTATGCATACTTTGCATCATGTTTGAATGTTTAACATATGTCATTGTGTTCTATGTGGGCTTGTACACGCAACATACGCAGCTTAGGTTTGTTCTAAGAAACAAAATGCAAGTCTGTTCTTTGCAGAAATGTGAAACAGTGTATTGAAGTTGAGATTGAGAATGTTAAGACATTGTTGATGTTTCAGTCGATTGCTGGCAATATAATGACAGCGAGTCCAATATCTGATCTGAACCCGCTGCTGCTGTCAGCCCAGTGCCAACTCACAGTCGCGTCAAAAGGTCTGACACTGCATTGATACAGCATAAGTAAAGGACGGGAAAATAACAACAAAGCTTTGCAAGAGTTATACTTATTTGTTTTAGTAACAATGCCCATCCTCTGAATGACGCTACGTACACACAGATGACGCTACGTACACACAGGTGACGCTACGTACACACAGATGACGCTACGCACACACAGATGTAGAGGACATTTTCTGGGAGTACTTGTAAATGACATTAATTATAATGTAAATTGAAACTGTTCTATTAGGTTAAAGTAAGTTACGTAAAACATCCATATCTGGTTGGCTTCTCGGGGCAGTCTCAGGAAAGACGCATAACATAACAGATGATTTATGTCTGTCTGATGCATGATACAAACAGACCTTGGACTCGGTGTGTTTCAGACAGAGGTCAGCGGACCATTGTCATGGATGACCAGTTCTTCCATGGCTACCGCAAGATATCGGTGAAACCAGACGAAGTCCTCATCAGTGTCATCATTCCCTTCACGAGACAGGTGACAATTACACTCGCTCTACAAACTCTACTTGGTTTACAAACTACTCGCTCTACAAACTCTACTCGCTCTACAAACTCTACTTGGTTTACAAACTACTCACTCTACAAACTCTACTCGCTCTTCTTGCTCTACAAACTCAACTCGCTCTACAAACTCTACTCGCTCTACAAATTACTCTCTCTACAAACTCTACTTGGTTTACAAACTACTCACTCTACAAACTCTACTCGCTCTTCTTGCTCTACAAACTCAACTCGCTCTACAAACTACTCACTCTACAAACTCTACCTGCCCTACAAACTCTACTCGCACTACAAACTCTGCTCACTCTACATATCTCTACTCTCTCTACAAACTCTACTTGCTCTGCAAACACTAATCGCTCTGCAAACTCTACTCCCTCTGCAAACTCTACTCCCTCTACAAACTCTACTCCCTCTACAAACTCTACTCCCTCTACAAACTCTACTCCCTCTACAAACTCTACTCACTCTACAAACTCTACTCGCTCTGCAAACTCTGCTCACTCTACTCGCTCTACAAACTCTATTCGCTCTACAAACTCTGCTCACTCTACAAACTCTACTCACTCTACAAACTCTACTCGCTCTGCAAACTCTGCTCACTCTACAAACTCTACTCGCTCTACAAACTCTTGTGTAACAGTGTTTCTTTTTCCACAGTTCCTTGCCATAAATTTTGTTTTTGGGGTATTGACCTGACATTGATAGGGGTCACTGACTTTTACAAAAATAAGTATCCCTTTATTGAAAGTGCAACATACAATGAAAGGTATAAAATTACTTTTCCAGTGGTGACTGTGCCCATGCTCAGTTTCTGTTGAACTTTATTTCTGCTGATTGCAGAATGAGTTTTTCTGTGGCTACAAGCAGGCACACAGGAGAGAAGATGACATTGCGATTGTGAACGCGGGCTTGAGAGTGGTTCTCAAGGAGGAGGATAATACGATAGAGGAGATGGGGTTGAGTTTTGGTGGAATGTCTCCTCATACTGTCATGGCAACAGCCACAGCGAAAGGACTGATTGGAAAGTAAATAGAACAAAATCAATTGTAGTATCACCATATTACAACAATGTTAAACAGTTAGAATTGAGAAACATTGCTATAAAATAGTTGCACACTGTTTCTATTCCAAGGTGAAACTATTTATCAATTAATTATTCATGCAAGTTGCCACTTATTGGCTGATGTTAGTGAAAAATACAGCTACGTATTTATAAATAAATAAAAATTATGTCATTCATGCCATAAGCAAATGTGATTTAATTAATAAAAGACAATATCACTTTTAATTTAGTAGTGTTTAAAACACCTTTTCTTTCAAACTCATCAAGTTACAATATCACATCACGTGTAAAAAACTAAATAACTTAAAATTGCTGCTTGTTCCTTGTTTCAGGAAGTGGGATGATGATCTTGTGCCAGAAGCGTGTGACCTCCTTGGGAAGGAGCTGTCCCTTCCACCAGGTGTGCCTGAGGGAATGGAGTCCTACAGAAACACCCTGTCTCTGAGCTTCTTCTTCAAGTTCTACCTGACAGTCCAGATGAAGCATGGCAACAAGCAGGTGATGGGCCAAATAAAAATAAATAATGAAAATGTTAACATATACGCATGCGTACACACAAACACACACAAACACACACACACACACTAGTTTCAGTAAGGTTAGATGATGTATGTTTATGCGGCAGACCAAGACCACAGTGCCATCTTCCTATAAGAGTGCCACATCCGTCTTTACGCGAGAGTCGAGCCACGGCAATCAGGTGTTTCAAGAGGTCGAAGGTCACCAACAACAGATCGACCCAATCGGTCGTGCCTTGCCCCACCTGGCAGCCACACAACAAACCACTGGCGAAGCTGTCTACCTTGATGATATTCGGCCATATGCAGGTTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00941	FAD_binding_5	FAD binding domain in molybdopterin dehydrogenase	Family	Interproscan
PF03450	CO_deh_flav_C	CO dehydrogenase flavoprotein C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002346	Domain	Molybdopterin dehydrogenase, FAD-binding	Interproscan
IPR005107	Domain	CO dehydrogenase flavoprotein, C-terminal	Interproscan
IPR016166	Domain	FAD-binding domain, PCMH-type	Interproscan
IPR016169	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR016208	Family	Aldehyde oxidase/xanthine dehydrogenase-like	Interproscan
IPR036318	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR036683	Homologous_superfamily	CO dehydrogenase flavoprotein, C-terminal domain superfamily	Interproscan
IPR036856	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45444	XANTHINE DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0071949	Molecular Function	FAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf4510_17.13 global RNA-seq network