Gene detail

Detailed information of PE_Scaf4343_1.7 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf4343_1.7	CRUMBS FAMILY MEMBER	Superscaffold3	9482481	9484718	+

Gene Structure

More details in Jbrowse Sequence

CDS

PE_Scaf4343_1.7

ATGAAACCCTTACTGCACTGTCTGGTGTCGCTCGCAGTGTTGGTGCTCGTTGACGCGAGGCCGAAGACGCCCAATCAGCCGAAAGACTGCGCCGAAATTCAAACACTGGGCTCAACAAAGAGCGGACAATACACAATCTTCCCAGGCGGCTATAACAAGGTGGTGTATTGCGACCTGACCACGAACGGCGGTGGGTGGACTGTCTTACAGCGCCGAGTCTCTGCCAAGGTTAACTTCTACAGAGGATGGACTGACTACCTCTCAGGATTTGGTGATTGGGACGGCAATTTTTGGATAGGGTTAAGCAACATCCGGCGACTGACAGCCGAACAGAACACTCTGCTTCGAGTCGAGTTGACGTCGAAGGACAAGGAACGAGGCATCGCCGAATACAGCGACTTCCGCGTGGAGTCGTCAGAGAAGGGGTACGCGCTTGCGTTCTCGGAGTACCTCAACGACAGCAGCACTGCTGGCGACTCGCTCGGCTTCCACAGAGGTCAGTCCTTCAGCACGAGTGACGAGGATAAGACTTCGAAACACTATGCACGGCTGTCACACGGCGCGTGGTGGTATTCGACGAGCCAACTGTCGTCGAGTAGCTCATCAAACCTCAACAGTCTGTTCGGGACGAGAGATCAATGGAAACCTGCCATTGGGATATTGTGGGCTTCGTGGAAAGGAAAAGAACGGCTGGCGGCTTGCGAGATGAAGATTCGACCGATGGCGTTTGTTGTCGCCCACACACAAGAGTGTACGCCGGACTGGTGTCAGAACGGCGGCACGTGCGTCCAAGCACGAACAGGCATCCTGTGCCATTGCGCTGACGGATTCGTAGGGCACCAGTGCCAGGAATCATGGGCGGCGCTAGACGGTAACATAACACTGGTTACGGGGTCGGACACAGCAGCGGCCTCGACAGAAGCGCCGAAGTTAGTAGAAGGGGTGGAATGCAGCGCGAACACCCACGGTAAGATTGAGTGCTGGAAACGCGGTCCGACAGGCGCGGAGCAATGTCAGGAGGCGCCGTGCCATAACGGCGGTACGTGTACGCCGCACGCGAAGACCTTCGAGTGCCACTGCACGAAAAAGTTCACAGGTCCGCTTTGCACGAAAGCGCAGCCGTGCACCGGCTCGTCGTGCCTTAACGGCGGCACGTGCGAGGCACTCGATTCGGGCGGCTTTCGGTGCGTGTGCACGAAGGGCTTCTCGGGCGCGCGATGCGAGATGGAGCACCCGTGCGCCGTCCAGCCATGCCAGAACGCCGGCAGCTGTCGCGAGCAACGCGGGTCGTACGCGTGCGCCTGTCTCAACGGCTACCGTGGCTTCAACTGCGAGCTCGCCGACCAGTGCATGCAGCAGCCGTGTGCCAATGGGGGCACGTGCAACCAGACCGGCGACCACGCATTCACGTGCAAGTGCCCGCCAGGTTATCTCGGCCGCCAGTGTCAGCGGGCGTCGCCCTGCCAGCGCGAGCCGTGTCTCAACAGCGGACTGTGTCAGGAAATAGGCGGCGGCACCGACTTCCTGTGCGTGTGCGTGCGCGGTTACAAGGGACGTCACTGCGAAGTCACTCCCTGGCAAGAGCCGCCGCTGTTTGCTCCGGCTTTCCACCCGGATGTGTCCGCGCTTGGTGACCCCGGGGCCGCGTCCGCGAGAGGTCCGATGTATGGTAACCCGGACAGGGATTCACCCATCAACTCCGCTATAGTCAGCGGTAACGGTGACGGCGACGAAGAGGACGAAGAAGTCCAGGTATTCAATGTCGTGAAGACGATGGCGCGCCAGTCTTCGACAGAGGACATATTGGCGACCATCATGCGGGAGCGTACCGGCAAGATCAAGGCCAGGAGGATAACATTCATCGTTATGTTAATCGTTGTCGTCACCTTCATCGCACTGGCCACCACCGTCGGCTGGGCGGCGACAAGTCGCTGTACGAAAGGGAAAAAAAAGTCCGTAAGGATCAACGAAGAGTCGGCATTGCTGGGCAGGAGAGAGCGCAAGAAAAGTAAGTCGGAGCCGCAGTCGGAATCGGAGCTAGAATCGGAGCCGGAGCCGGACTCTCAAGGTGACATACCGAAAGCAAAGAATGAAAAGAAACCGAAGTCTGAGAAAAAGGAGAAAGGAAAAAAGGAGAAAGGATCAAAGGAGAAAGAAAAAAAAGAGAAAGGGGCAAAAGAGAAAGGTGAGAAAGGGAAAAAGGAGAAAGGGAAAAGGGGGGGGAATGGAAAGAAGTAA

Transcript

PE_Scaf4343_1.7

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00147	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR014716	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf4343_1.7 global RNA-seq network