Gene detail

Detailed information of PE_Scaf3991_1.12 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf3991_1.12	METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE	Superscaffold5	30142434	30147795	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf3991_1.12

CACCCTCCAATCACGAAGAAAAACCCAAAGACTTAGCATATTATATAAAATGGAACATAACCTCATAGATATCCCACTAGATCAATACACCAAACGCAACACCAGATGCTCACGTAAACATAATAAACAGTTAGTACAAATCAGGCACTCGACAAACATATTTGAAAACAGCTTTTTCCCAGTCACAATAAAAGAGTGGAATTCTCTACCTCCAAGCATTGTATCAAGTACGTCACTGAATTCATTCCAGATTAGCCTAGCCCAACATGTAAAAAATTAATCCATAAGAGCCACCATGCGCACTGGCGTGATGTGTCCATAGGACATTTTGCCAGTCAAAATACAGATACAGAATGCGAAATCACACGAATGTATGTACGGAGATACCGCCATCTCGGTGGTAAGCAGTCCCATCGGCGACATACAACTGGTCATTTGTCCAAGAGGTGTCCATGCGCTACGTATGATATTTGAGGACTTTGAACTTGCGGAATGGTAAATAAATATACAGTGATGCATGTTATTAAAATGGACACTGGGCTTCATATATTCAAATTTAAATAGGCTCGTATAGACCATAGTTGTTCTGCTTCTACTAGTAGTACTACTACTATAGTAGAAGCAGAACAACTAGTTTCCAACATCCCGGAACTCGTCATTCTCGAACCCCTGCCTGGCATGAGAGGAAATCAAATCCTTGGATTAATTAGGCGAAACATAACGTATAAGGAAAAAGAGCTAATAATACCGCTGTACAAAACAATAGTTAGGCCTCATTTAGAATATTGTATTCAAGCTTGGAGGCCATATTGCAGGAAGGACATATATGCTAGAAAGAGTGCAGAGGAGAACAACTAAAATGATAAATCGTTGTATTTCCGACGTCAGAGAGGCGACCTTATTGAAACGTACAAAATACTTAACGGAATCGACAAAGTTGAAGCTCATCAATTCTTCCAGGAGAGGGACAGTACAGCAACACGAGGACACACGAGAAAGCTTTTCAAGCAAAGAACAAGACTGCTGGCCAGACAGAATTACTTCTCAGTTAGAGCCGTGGATCAATGGAACAGGCTCCCACAACATGTGGTAGATGCCAAGACCGTCACACAGTTTAAGGCTAGACTCGACAAGCACTGGAATAGCCTAGGATATGGGCACCAACAAAGGCCAATGGCCTAAATCAGCCCATTAACCTGTAAGTGTAAGTAAGTGTAAGTGATACTAAAACTGAGGGATCTTAGTTACGAAATACGCCTAAAAATGCGGTTTAACAACACTAGAGACCAGGAGATTGAGAGGAGATCAGATAGAAGTGTTTAAAATATTGAATGGTTATGAAAATATTAATATAATATTTTTTTTTCAGTTAAGAAAGATAGAAGGACTAGAGGACATAAAGTTACATTAGCAAAGGAGCAGAGTAGATTAGATATAAGAAAGTTTTCATTTTCACAAAGGACTGTAAATGAATGGAACAGATTATCTGCTGATTGTGTGGGTGCTAGTAGCGTGAATATGTTTAAAAATAAAACTGGCGGGATACACATAGATAAAAGGGTCGGACTCTCGATAAGCCAAAGGGCTTCCTTGTCCACCTGCCACCTCGAGTTAATTCTCTGGGTGGCAATCTTGTTAAATCTTGATGCTCTGATCTGATGGTGGAAGGAAGCCAGTGACGCACACACTCATGCACCGACTCTGGCATACACACGCACACGCACACACACACACGGGCCATACCTCTAATCTGAATGGTGTGAAGGGTGGAGATGAACATGAAAACACATGGACTCATGGAGGTGAGAAAGGGAGGCGGGTGAAATTGGATGTTTTTTGTGGAGAGCCGTAGCGGGTGGGGGCAATTGTTAACTTTTGTTGAGTGTAAAGGGGAGTGCAGTTGGAGCTTTTGGGAATGTGCAGTTCCGTGTTATTGTTGAGAGCCAATTAAAGGGCGGAGCAATATAGTAATTTTTTGTTGAGTGTAACATGTAAGGTGGGTGCAATTTGCAAATGAAGCTTGTTGAGGAACATCGAGGGCATGCAATTGGAGGTGTTTGATGAGTGCCAACTAAGGCCTTACGTGTGGTGCAATCAGACGTTTTTAGTGACCATCAAGAGGTGTGCAATTGGAGGTTTTTGGTGTCTATTTTTGTGAGTATCAATAGTTTTTTTTTATAGATGTTTGTTGAGTGTCAAGAGGGGTGCAATAGGGACTGTCCAGTGAGTGTCAATGGGGTGCAATTGGATTAGATACCTGCCCAAACAATGCACATGTGTGTTGTATATTTGTATTCAATTGACAATTAATATTAATGTCTAAATCTTAAGATCACTTTCACCTTTCAGCAAGGTTGCTATAAAAAGCAGCTCTCACAAACTTGACAGCAGCAACACCCTGTCACTCTGCGTGGATTGGCTGAATGCATACTTCCAGGGAGCTTCAGATATGCCACTGCCACCTATCTGTCATCTCAACATTCCAAAGAAAACAGGTAACTAACAATTTAACAAGACGTATAATGGTACATTTAAATAACCTACTTACATATTTCATAATTATAAATCATAGCAATCAACTAGATGTTCATTGAATTTTGTTTAGAAAGATATGATAAATATTATAATGCTTGTGATGTACTCTTTCAGCAACGTTTACACAGCAAGTATGGAAGATTATTGTGAACGAAGTTAACTACGGCATGACTGCATCCTACGCCGAAGTTGCCGCCAAGCTGAATAACAGCAAAGCCTGCAGGGCAGTGGGACAAGCAATGAGAATCAATCCTGTGTCACTTATGATTCCGTGCCATCGTGTTATCTCGAGCAGTGGAGCTGCAGGGAACTATGCCTCTGGCAGAAGGAATGACGTGAAAGCATGGCTTATTGAGCATGAGGCAAAGACTGTGTGATTGCATGTAGCTTCAGCTTCTTCTCTCAAGTTTCACTTGCAGGTGCATGTAGGTAAATACAACAGACCATGTTGTGGAGAAGTAAAATGTTAATTCATTTTATATACCCATTTTATTGAACCATTTCTTCTCTTATTTTTCAAGGAATATTCTAATACCTATACATATATATACAGATACACACACACACACACACACACATACATATATGTGTGTGTGGGGGGAAAGTTCAACTTTATCTTGGTACCACATATGTGCAGAGTGTCTTATGTATAATTAATACATTTTACATGTATTAAGAAACATAGCCAGATAGTAAAATAAGCAAACATCATGCACTAGATCACATTGATACTGTGAAGAACCGGCACTATATAACTTACGGTGAACCTGATGGGGTAACGCATTGTAAATGTGATGAATGGGGTGAATCAGTGTAAATGTAATGGATATGGTGAGTCGATCATTGTCTGTCAGTGTAATTGTGATGGATGGAGTGAGTCAATGTAAAGGTAATGGATGGAACAAGTCAGTGTAAATGTAATAGATGGGGCGAGTCAGTGTAAATGTAACGGATGGGTCGAGTCAGTGTAAATGTGGTGGATGGGGTGAGTCAGTGTAAATGGGGTGTGTCGGTGATGTGTAAATGTAATGGATGGGGTGAGTCTGTGTAAATGTGATGACTGGGGTGAGTCTGTGTGTATGTAATGGATGGGGTGAGTCAATGTAAATGTGGTGGATGGGGTGAGTCAGGGTAAATGTAATGGATGGGGTAAGTCAATGTAAATGTGGTGAATGTGATATATGGGTAAGCCATTATAAATGTAATGGATGGGGTGAGTCAGTGTAGTGTAAATGTAATAGATGGGGGTGAGTCAGTGTAAATGTAATGGATGGGGTGAGTCAGTGTAAATGTAATAGATGGGGCGAGTCAGTGTAAATGTAATGGATGGGGTGAGTCAGTGTAAATGTAATGGATGGGGGGTGAGTCAGTGTAAATGTAATGGATGGGGTGAGTCAGTGTTAAAGTAATGGATGGGGTGAGTCAGTGTAAATATAAGTACTATTATGGGGTAATGGATATAATGCAGTACATTTCTCAGAGTAACCAAAAACAAATACTACTTATTGTGATATGTACAACAACATATGTAACAGAAAATAAGTTTAAGACATAATCTATATACATATTACACCATCATCTAAACAATCTACCAGGTAGTTTGCTACATCGTTAACAATATGAGACGTTGGTAATACTGTACATCCATGTAATCATTTACTGATACTGCACATTTTTGGTCTGTCCACTGACATCTGACTAAGGTGATTACAAGTAAATAACTGTACAATGGGTAATACTCAGTGTAAGTATGGGTTTCAGTAGTTGTCACAGTAAGCATCAGTGTACAAATGTGCTCCCTACGTCCTCTACACCCCCTGTGCCCCACACACAGCGGTACTATGTAGAACCTCCTGAAACTTGAGTTGTCGACGCTTCATCAGTAGGTTTTCACAAAAACAGTAATGGGATTAATATGCAGAATGTATTACTTGATACCCACTTAAAGGGAAACAGAAAACAATTGCCTGGGGACACACACCTACAAGAGGAAATACCAAATAACCACTGGTTCCTACAATCAACAATATCACGCCAGTGGTTTGCTCAGAATGTGTTCCCAAAGTGGTATGTTGTGTTGAAATCTCGTAGTTGCCATCCTTGCAAGCCAAGGGTGGTAGTTGGCTACTCTTGGAACTGTCAGGGTTGGTGACTATACACTACCATGGCAGATATCCTGTGCAATGTATGGAAGTTTACTGAAGTAGTTGAACATCTGTACTTGGACCTGGAACTGTCGGTCCATTGTGACATGCTGTGGGAACCATGAATCCAGCATGATGGACAAACGGGGTGAAATGCCCATGACCCAGATCAAAGGGCACTTTACTGGAAATCCTAATATTATTACCCATTCGACCATTCTCATGAGAAACTGCCGTAATGTGTATTCAAATAATTACTTCTACCTCCCGAACATTGCGTGCAGTATCAGCCATGATTGGCTGAAACAAAAAAGCCGAATCTTGAAAGGCACCGAGATATTGCCTCAACCGAAATTCAGCATTTTGAAGAGGATCTGCCAGTATTGAGACTGGTGTAATCAGCTGGGCCGATGGATAACATAAAAATTATTGGGATTTGGGACAAAACCCTGATGATTGGCACAGGCAAGGCTGCGACGTGTAGAATTCTTGTTTTGCACGACATGTATATATGAATTTGTATATCATTTTCTCATATTCCCTTCAATAATATTCTTGATTGTAGTAGCAAATGGTTAACATTGCTTTTTGTTTCCCCTTAAATTTAATATCTTATAGATTGAACATTATTGTGAACCTTTTTATCATCCCTGATGGTTCGGCAGGAACAAGATATGGAATTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01035	DNA_binding_1	6-O-methylguanine DNA methyltransferase, DNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001497	Active_site	Methylated-DNA-[protein]-cysteine S-methyltransferase, active site	Interproscan
IPR014048	Domain	Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding	Interproscan
IPR036217	Homologous_superfamily	Methylated DNA-protein cysteine methyltransferase, DNA binding domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036631	Homologous_superfamily	Methylated DNA-protein cysteine methyltransferase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46460	METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003908	Molecular Function	methylated-DNA-[protein]-cysteine S-methyltransferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf3991_1.12 global RNA-seq network