Gene detail

Detailed information of PE_Scaf3941_1.5 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf3941_1.5	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Superscaffold8	56483562	56490330	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf3941_1.5

GTCTTACTACAGACATGGCGAACAAATCAGCAGCATTTGATCACCTTGTTTTTCCAACCAACGTACAAGGCAACTACAAAGCCCAGTGTAAACACTGCGACATGAAGATTTCCTCCAGCTCTGGGATAATAACAGACTTGTTGATACACATGAAGGTAAGGTTATATAAAAATTATTGCAAATATGCACTATTATATATGTATGTTTGTACTACACCAGTATGGTATATATTAAGAATATGGTCGATCATCGCTGAGAAATGTTCTGAAGTACTTGTAGGCGTTGTAGTTTAACGGTATTATAGGGCTGGTGTTACGCAATAATGTCACAGGAAAAAAAATTCACAGAAAAAATTCACAGGGAAGAAAAATACACGTTAAATATCAATAAATATCAAACAATATATAATCCTCGTACAAACAACATATGTAAAGGATGGAACAACAAATTCGACAAATTCTGTATATATATATATATATATATGTATGTATAATATACATACATTGTATATATATATTATATATATATATATGTATAATATACTTACATTGTATATATATTATGTATATATATATTTTACATAATATAATAATTATATATATACATAATGTTATAAAATATATAAATGAAATTTTGAATTTTACAAAGGGCAAATCCTACTAACCACATGTAACTAAATATCTGTACAGCTGACCTATTTAATTAGGGAAATGTGGGCTGAACGGTAGGTTTGACTAAATAAGGGTTCTATTCAAGTGGCAGAGGCTTCCCATCCAACACAAAGGGAATTAGCAGGCAGGTGTCCTTAATGTTGTATGGCTATATTTGGCGGAGATAGATCGTAGAAATTGGTGGTGCAGAAAAGTTGATAAACAAGTGGAATTACTGATTGATAAGTATTATTCTTGCCTTAATATCATTCATAAAGTTGCAATAAACATATATTGAGTAGCAGTTGTGCTTAAAGTTAGTTAGTTATAGTATTTTAGAATACCTTAGTATAGTGAGTGATAATAGGGTAACTCACTTAGGCTTCGATAATTTGTAAACAAGATTTAACAAACCTGATTATGTGGTAGAATATATAGGGGATAAAGTAACAACCATCAAACTACTTACATAAGATAATATCTGTGTAAGCCAGTACTTGCTAGATATTTTGATTAGGTAGCATTGTTAAAATTAAGCAAGGGCGATAGTCGGGCGGCGTAACCTAAATAAATAAAGCAGCCTAACGTAACGTAATTGATTGTATTTAAATTAGGTCACTACCGGTAATGTAAGCGTTCGTGTCAGGATAAATAGTTGGCTGTGTAATTGAAATTTGTAACCTAAAGTGTGCTGTAGTACACAGGAAACAGTCTTTATAAAGACTAAGTTAGTTAAGAAGTAATTATTAAATAAATTCTGATCGGGATATGGCGCCTTGCAAGCGGCAAGTCAAGGCAAAGCGACACTTGGTGTGCGATCACTGCCACAGCTGGGTAGATTTTGCATTGTCCGGCTGTGGGAAGTCATGGGCAGAAACCATGGAGGAAGGATTCACCTTTCAATGCATTGGGTGTTGGGAGGTGGAGTGTCTGCAGAAGGAGATAGTTAGGTTGACAGATATTGTGAAGGGAATGGAGATGGGAATTAGCAAGGAGGCAGGTCGAATGGAGAGAGACGACAGGGAGAGAGGTGAGAATACTGCAAGACTGAAGGAGAATAGCAGTGGCAAGAAAACTGAGGAAAGGAGATTGAGAGGAGGGAAGGTGATTGGAGGGGAAGAAATTGGAAAATCGACAACAGAAAACGTGACAAGCGTGAAGGTGACAGGGAAGAAAGTGACCGTAGAGAAGGAGGGAGGGAAGATGGGAAGGGAGAGGAGAGAGGAAAACGAGATGGGACGAACGAAGAAGGGACGAAAGGAAGTGAGAGAAAATGTGATAGAAGAGAAGTCGATAAAAGGGAAGGTGACAAGAGAAAAAGCGACAGGAAAGAATGGATCGGAAGAGAATGTGACAGGAGAGAAGACGACAGGGGGAAAGACAACAAGCAGACAGATGCAAACCGAAGAAGGAGCTATTCTAAGGCAGTGATTGAGGGGGCAATGAGGAAAGAGAGGGTGTTTATGGGCGACTCCATTATGAGAAAGACGGACAAGGCACTGAGCGAGTGGAAGGACATCGTTGTTTGTTTACCGGGGGCTAGGATTGAACATGTAACTGACAGGGTAGAGAAGGTATTGGGACATGGCAAGGGGGGGTCTATACTGGTACATGTAGGAACAAATAATGCAGACAGGGAGGGAACAACTGCGATAGTACAGAAGTATAGACAGTTAGTGAGGAAGCTAAAGAAGACGAGAGTTGAACATTATTTATTATTCTGTCAGGAATTTTGCCAGTAATGGGAGGAAGGGGGGCAACGTATAGAAACTGTAAGAGGATGGCGATCAACGCACTAGTTGAGCAGATGTGTGACGAAGAAGGGGTGGGATTCACAGATTTATGGGGATACTTTGTTGGGAGGGAAGATATGTACATGAGAGATGGCCTCCATCTTAGTGGAAAGGGGGCAGCAGTTTTCTCAGAGAACCTGCTGCGATCTGTTGACAGTGGGACAGGTTGTATCTATTTAAACTAGATTCGCAGGGGGGACTCACAGAAAAGCCTGAAAATGGAGGCATAGATAAAGACAGCACAAATAAATCAGCAAATAACAGTCTGGAAAACTCTTCTGAAGCTGGATATAAATGTGTTTGTTTAAATGCAAGGAGTATAGTAAACAAAAGAAATGAACTAAACATTATGGTAGAAGATATTGACCCTCATATAATAGGTATAACCGAATCCTGGACCACCATCGATATATCAGATGCTGAATTGGGACTGACAGGATATGTAATGTTTAGAAAAGATAGAATAGGAAGAAAGGGAGGTGGAGTTATTTTATATATTAAAGAATCTATTCAGGCTTATGAAATAAAATTAGAAAGAGAAGCAGATTGCGAAGAAGCTGTTTGGTATAACATAGTTACAGGAAACTCAACGTTAACAGTTGGGTTAGTTTATCGAAGTCCAAACATAAGCATAGAAGAGAATTACAAAATACAAAACACTATAAGGGAAGTAAACAAACGGGACTGTATTATTATGGGGGATTTAACCACGGGCATATACAATGGAAATCTGTACAGAGTATGGGGAGTGAGGACCACAAGTTTTTAGTTTTAGTTCAAGATACATTCCTTTCTCAACATGTACTAGAACCAACCAGGGGTGAGAATGTGTTAGACATAGTTTTGTCCTCACAGAATGAATTAGTTGACAATGTCAAGATATGTGAGCCACTGGGGAGTAGCGATCACAACCAGATACATTTTACCATCAAAGTAAAATCAGAAAAGAATAGTAAAAAGCAGTATAGGAGAAATTTCCACAAAGGAAGGTATAAGGACATGAGGAAATATTTAGCAAAGATAGACTGGAATAACACACTGAAAAATAAGACGGCAACAGAATGCTGGAATATATTAAAGAGTGAAATTAAGTGCATAGTCGATAAATTTGTACCCTTCAAAAAACAAGGAAACGGTCCAACAGGAAACACTTATCGAAAGAAGCCATTAGAAAAATTAAGTATAAACAAATGATGTGGAAGTCATATAGATGTACTGGAAATGATGAAGACTGCAACAGTTATAAAGAAGCACTTAACCAAGCTACAGCTGAAATTAGAAAGTCAAAGAGAAGCTATGAACAACAATTAGCTAGTAATATAAAACAAGACAGCAAGAGTTTTTATGCGTATGTTCGAAGCAAACAGAAAGTTCGAGATAAGGTCGGTCCTCTAGAAGATAGTGCTGGAAATATAATATCAGAGGGATTCTTAATGGCAGAAGACCTGAATGAGTACTTTATTTCAGTGTTTACCAGGGAAGATATTAGTTCACTGCCAGTACCAGAGGCTAAGTTCAAGGGGGCAGATTCAGACTATTTAGGACAATTAATTGTAACCCCGGAAATGGTAGCTAAGAAAATAAGGGCTATGAAAGATAATAAATCACCATCAACTTGTCATTAGAAGAGGGAGTGGTTCCTTTAGAATGGAAAGAAGCAAACATTATACCGTTATTCAAAAAAGGTTCGAGAAACAAGTCAGAACTATAGACCAGTGAGTTTAACATGAGTGACTTGTAAATTATTAGAAAGACTAATTAAAGATCACATGGTGGATTTTCTTGTTAAACAAAACTTGATTAACCCATCTCAACATGGTTTTTTTAAAGCGAGGTCATGCTTAACAAATATGTTATGTTTTTTGGAAGACATCACTAAGTGGGTAGATGAGGGATCACCAGTAGATATCGTCTACTTAGATTTTCAAAAAGCTGTCGACAAAGTACCACATCAAAGATTACTGCTGTAACTAAAGGCCCATGGCATAGGAAATGGTATAATAAACTGGATAGAACAATGGCTGATTGACAGAAGGCAACGTGTAGTAGTTGATGGGGAGGTTTCAAACTGGAAATCGTTATTGAGTGGGGTACCACAGCAATCAGTATTAGGACCTATATTATTCTTAATATATATCAACGATTTGGATAATGAAATAACAAGCAAGGTGTTGAAATTTGCGGATGATACAAAAGTGTTTAGAAGGATTAAAAGTGATGGAGATAGACAGCATTTACAAGATGACCTTGACAGGTTGATCAAATGGTCTGAAAAGTGGCAAATGCTGTTCAATTTTTGGAAATGTAAATGCCTCCACACAGGACATGGGAACGAAGAGGTAGAATATACAATGGGGGATACTGTACTAAGTTCTACTGTAAAAGAAAAGGACTTAGGGTTAACCATTAGTGCTGATATGAAGGTTTCAGAGCAGCGTGGAATTGCAGCTTCAAGGGGAAATCAAATCCTTGGATTAATTAGGCAAAACATAACGTATAAGGAAAAAGAGCTAATAATACCGCTGTGCAAAACAATAGTTAGGCCTCATTTAGAATATTGTATTCAAGCATGGAGGCCATGTCGCAGGAAGGACATAGATATGCTAGAAAGAGTGCAGAGGAGAGCAACTAAAATGATACCAAAACTGAGGGATCTTAGTTACGAAATACGCCTAAAAAAATGCGGTTTAACAACACTAGAGACCAGGAGATTGAGAGGAGATCAGATAGAAGTGTTTAAAATATTGAAGGGTTATGAAAATATTGATAGAAATATTTTTCTCAGTTAAGAAAGATAGAAGGACTAGAGGACATGAACTTACATTGGCAAAGGAGCAGAGTAGATTGGATATAAGAAAGTTTTCATTTTCACAAAGGACTGTAAATGAATGGAACAGATTACCTGCTGATTGTGTGGGTGCTAGTAGCGTGAATATGTTTAAAAATAAAATCGACACATACCTCAGACGGGCGGGATACACATAGATAAAAGGGTCGGACTCTCGATAAGCCAAAGGGCTTCCTTGTCCACCTGCCACCTAGAGTTAATTCTCTGGGTGGCAATCTTGTTAAATCTTGTTAAAATTGGCATTATGTGTAAATAAATGTGTCCACTGAGAAAGGCAATGAGATGAGGTCTGACTGATCTGAATTGCAGGCAGCCACTAAATCCATAGGCATTTGTAAAAAGGGTAGTTGGCCAGAGAACCAAGTTCAACCAACTTCAAAGAACTATTGAAGTCATGCATCTGTCACACTGTCCCAGTGTCTCCTGCTATGTAAACTCTAACAACCTCCAGAGTGAAACACACAGGGGGTCATGATTCACAGCTGGGGGGGGGCAATCTTAAAACAACTGCTTAGATATCTTGTTTTATAGTTTTATTGTCATAATATATTTAATACAGATAAAAATATGAATTGTTTTCTAGCTACATATTTGTTGTGCATTGATACATTTCACACTTTAATTTCAATATTAATTTCTAATTTCAGAGAAAGCATGCTGATGTTACATTGACAAAACCCAAGACATCAGATTCACAGCCAGACATGACCAGTTTCTTCTCCACACCGAAGAAATTTGCAACGACTGATCCACGCCAACGTCAAACAACACACGACCTGGTATCTTTTATTACTGGCGATCTCATGCCCTTTTCTCTAGTAGAAAGTGTGCACTTCAAGAATCTGATCTCAAACCTCGAGCCACGCTTCCAGATGCCCACCAGGAAGCATTTGTCTACTTTTCTTCTCTATGATGCCTGCAGGAGTGTCTACAGTAACGTCAAAAGCCGCCTGGATGCTGCTGAGAATGTGTGCGTCACAATTGATCTGTGGTCAAGTCGCCAAATGCGCAGCTTCATCGGTATAACCGGACACTGCATCACTGATTGGAGCATGGATTCTTTCATGTTGGCGTGTAACAGATTCACCGGGCGTCACACCGGAGAACACATCATGCAGCAGTATTCCGAGGTTATGGAATCCTTCGGCATCGTATCGAAGATCTGTGCAATCGTTACAGATAATGCCTCGAACATGAAGCGCGCATATTCTCTTCCTGGATTCAACGCTAGTGCTCCCGATAGTGATGGAGATAGCGACACCGACGATGAGTCTGACCCCTTAGCTTTCTGGAAGCTGCACAGGGAAGAGTTTCCCACACTGGCACGACTTGTACCAACCCATCTAACGGTCCAGGCTAGCTCTGCACCAGTTGAGCGACTATTTAGTGTCGCGGGAAAAGTCTTTCGCCCAGACAGATGTAGGCTAACTGATGAAAAGTTTGAACGGATCATGTTTGTGCGGTGCAACAGGAAATGA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-BED

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02892	zf-BED	BED zinc finger	Domain	Interproscan
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003656	Domain	Zinc finger, BED-type	Interproscan
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR052035	Family	Zinc finger BED domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46481	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf3941_1.5 global RNA-seq network