Gene detail

Detailed information of PE_Scaf3707_2.14 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf3707_2.14	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATED	Superscaffold3	5178640	5180682	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf3707_2.14

ATGGCCAAGCGACAGAGGCTGATGGATGACCAGAAGACCACTGGTCAATCTGACGCCACTGGTCAGTCTGACGCAAGTGTTCATTGCATTGAGGCTGCGCATTCTGCCCACGTTGACATGAATTTGGACGACATAAAAATAACCGCCCTGCCAGAGAAGAGTGCAGCTGTGCAGATATGTACCGGTGAGATCCTGTCAGGGTCAGTAATACAACAATTGTTTCAATTCACAATTGCACTTTGTAATTAACCCTGAGAATCCGAAAGTGTCTGGATGTCCACTTCCCCAGAGAAGTCGAGATGGTGTTTGATTGAACAGGGAGTAAAGCACTTTGAGCAGTCCTGAGGATTGGATACTGTGCTATATAAGAACTTACCTTTATTTTTTAATAAGCCATACAATAGCTAATTATGATGAAGGTTATGCTTTGATCTTAACGTTATCTGTATCGATCACCCGATAACACATTCATTACGTCATTAATTCATAAACATGCACTTGAATTGAATAAGGAATCGAAATAGAAATACCTGAACTAGGGCAATTGTAATAAACCTCAAACCTGCCATTACAATATTTTGAAATCTCGCACAGTGTGGCACATATATACAATGGTATTAGTGTTGTCTGCAATTTGAAAGCAGCTCAGAGACTCGTGTAGTGGCTAGAGCGTCGCATTCTCAGTTGAGAGAACCCATGTTCGAATCCTGTGCTGCTGTTTCAAAACTTACTCCAACTCATTCAGCTGTATGAATGAGTACCTGTCTATAAACAGTGGTTGATATTTGTGTTCGAATAGTCTTCGTGCATTAATTGCAGCATGGCTGGATGTCTCCCAGAGATGTCGAGATGGTGTTCGATTGAACAGGTCTGCCAGGGAGTAATGTGTAAAGTGCTTTGAGCAGTTTTGAGGACTGGGTACTGCGCTTACCTTTATTTGTGTTGAGTTGTAGAACCTACCTAAAAATGTGTTGAGTTGTAGAGCCTACCTACAGACGTGTTGAGTTGTAGAGCCTACCTTCAGACGTGTTGAGTTGTAGAGCCTACCTACAGACGTGTTGAGTTGTAGAGCTTACCTACAGACGTGTTGAGTTGTAGAGCCTACCTACAGACGTGTTGAGTTGTAGAGCCTACCTACAGATGTGTGGAGTTGTAGAGCCTACCTACAGATGTGTTGAGTTGTAGAGCCTACCTACAGATGTGTGGAGCTGGAGGAAGCTGAATGGCGCTACCCTGTGACAGAGACTGAGACAACACGGTACCGAGTCTTCAAGGACTTGTGGGAGAAGGGCTACTATCTGACCAGCGGGGGCAAGTTTGGGGGCGACTTTCTTGTTTACCCTGGTGAGTACATGTGAACCTTTGCAGAAGGCATGTATGACGTGGAAATATGATATATATGTAATATTATAGGAACTGTCTGTGTAACGAATACCTCTCACTCAAGTCGTCAAGCCACAACACAACACTTGTGTGGGCCTCTTCACTTCGCAGTGTGGCACCGACATGTTTTTATTCAAATACTCTGGTAACAGTAACATGACTCTACCTCCCAACTCCCTACTTCCAACAACGAGCTTCAACTGCCACTTCCACTCTCCCAATCAACTCCTCGCCGCGTCCCATCTATTCTTAGCCGCCACACCCGGCTGATTACATAACATCTCGTTACGTAAGGTGCACTGGGCTGACCTTCTGTAGTCCGGCCACTGCCTCTGTCTGCCAGGCTGACTTTATGTACTTCATCCACTGAGTCTACCTGCCTCATAAAAACCATCTAAACACTGTTGCGTAACATCTGCTATCAATAGAGGATGTCATCACAGGCATGTTACACAGACATATATGTGTTACAGCGCTGTGTTACAGAGCAGCGTCAATTAACTCTGTTACATATCAGTGTTATATAGCTGCTACGCAAATGTTTGATACAACTGTTACACAGACCGTTACGTCACTGTGTAGCACAACTGTGTCACATAGCTGTGTTACACATCTGTTACAGAGCTGTGTAACATGTCTGTGCTACAGAGCTATTACTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01974	tRNA_int_endo	tRNA intron endonuclease, catalytic C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006677	Domain	tRNA intron endonuclease, catalytic domain-like	Interproscan
IPR011856	Homologous_superfamily	tRNA endonuclease-like domain superfamily	Interproscan
IPR036167	Homologous_superfamily	tRNA intron endonuclease, catalytic domain-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13070	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000213	Molecular Function	tRNA-intron endonuclease activity	Interproscan
GO:0000379	Biological Process	tRNA-type intron splice site recognition and cleavage	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006388	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf3707_2.14 global RNA-seq network