Gene detail

Detailed information of PE_Scaf271_1.2 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf271_1.2	60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N	Superscaffold6	32302408	32304495	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf271_1.2

ATGGCAATCAGACCACTCATTAAGCGAAAGGTCCTCAAGAAGCGGATGAAGCCATTCATCCGCCACCAGTCGGACAGATATGTGAAAATCAAGGTATATTGTGCACTTACGTACTATTCAGATATATGGCACATGTTTCCAAGCTGTTATTTAATACAAGTAATGTCTATTGAAAATGTGTGATGAGATGTTGAAACATTAAGATATGGGTATGCAAGTATTGTTGAGGATTTTTGTTGTTGAAATATATGACTTACATGGCACGTAAATCTGTAATCACCTTCCTGTTAAATTGGTGATGCCAAACCATCCCACTTGTCAGGTAATTGCTACAGGCTTCATATATATATACATTACTTACTTGTGCCCATCGTCCCTCCTGGGGCATAGGCCTTCGACAACAGCTCTCCAGAGTCCTCTGTCCTGGGCTCTTGTTTCAAGCTGTCTCCAAGTGTGTCCTGTCTTCTTGGTGTCCGCATGGAGGTCCCTTCGCCACATGTTCTTTGGATGACCTCTTTTTCTCCTGCCTTGTGGGTTCCATGTCAGAGCCTGTCTGGTGATAGTTGATGCTGGTTTCTGGAGCGTGTGACCAATCCATCCCCATCGTCTTCTTATTTCATCTTGCACTTATGTACTAGTCAGATATATGGCACATGTTTCCAAGCTGTTATTTAATACTAGTAATGTCTATTGAAAATGTGTGATGAGATGTTGAAACATTAAGATATGGGTATGCAAGTATTGTTGAGGAGTTTGTTTTTTGAAATATATGACTTACATGGCACGTAAATCTGTAATCACCTTCCTGTTAAATTGGTGATGCCAAACCATCCCACTTGTCAGGTAATTGCTACATGCTTCATATATATATATACATAGTGTCTCGTTATTCTTGGTATTTAGAACATGTAATTTTGTTATCTACAACCTGTAAAAATCCTTCTTTATGTTCTACCAGAATGGCAAATATGTACATAAAGATCACTGTGGCCACATTTTCACAGTCTTGTTATATTTAATTAGTATGTAATTTGTTTGTGTACACAAATCCAAGTCATCCACTAGCAATAATTAAGCAGCTCTGTTTGGCGGCTATACTATAATTTATTGACAGAAAGTAGAAGTTCATTCGACTGCAAATGGCAGAGGTGCACTAGTTCCCATGAATAAGTAAAATGTGAATATATCACCATATATTTCAGCATTCGTTGTATTAGTTATCATATTATGTATGCGGTTTCAGACAAGCTGGCGTAAGCCGAAAGGTATTGACAACAGGGTGAGGAGGCGGTTCAAGGGTCAGTACAAGATGCCCAACATTGGTTATGGTACAAAGAAGAGTTGCCGTCATATCTGCCCTGATGGCTTCAAAAAGTTCCTTGTCAACAATGTCAAGGTAGGTTTTAATGTTAGCCATACTGTGTGCCACGGGTCCAATTCTAGACTTTGGATATGTAAACACATACATGTCTGCTGCGTCTCGTGTATTGTATAAGGATGCTCGAAGTCTCCGGGGTCTATGTATAGAGTCCAGAGACATCCTTGCAGCTATAGTAGATTAACTAACCATCCATAAAGTCATCCATATTTTAACAGTCCCGCCTTTTTACTACCCTAATAATTGTGTTTGTTGCAATTGAAATGGATCTGAAAAAGTCTTAGTTATGGTTGTCTCGCTTACCTAATTCTGACTACCGGACATAATATTACATATCGGAAGTGAAACATATTTTTATGTGATGAATGAAATTAATATTACAGTTTGCTAAATCTACTCTACCATCTGAGCTGCCTTGTTAAAATTGGGAAAGTGATACATGAAAATATGGACGTGCTGTTATGGCATTAATATTCTGCTGAACATGTATTTTGTCATAGCTTTTGTTTGATGTTGTGTACACCCCTACTACTGATACATGCAAGTGCTGCTTGAACCGGTCTAGCATTTTTATTTGGCTTCCACAAACTTAAATGCTCTTAAAATATCTGGGTCAAGAGATTTTCAAATAATTCACTTAAAAAAACATGGTTATAAATACACCCCATTAATCACGATTGCCATCATTTCTGTAGCAACAACCCATCTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01655	Ribosomal_L32e	Ribosomal protein L32	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001515	Family	Large ribosomal subunit protein eL32	Interproscan
IPR018263	Conserved_site	Large ribosomal subunit protein eL32, conserved site	Interproscan
IPR036351	Homologous_superfamily	Large ribosomal subunit protein eL32 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23413	60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022625	Cellular Component	cytosolic large ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf271_1.2 global RNA-seq network