Gene detail

Detailed information of PE_Scaf12639_2.15 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf12639_2.15	NUCLEOSIDE DIPHOSPHATE KINASE	Superscaffold5	7799824	7803680	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf12639_2.15

TAGCAACGTGGAATGGGCTGTCGTTCCTACTGTTTGTTGCTAGTTAAAGGTGCCTGTGTGGTATTGGTCGCGTATTTTCTGCATCTACTAACCCTCAGAATGGCGGAGTCTCTTACGGCCATATCGGTAGACGACGACGACGTGGAGGAAGAATATCCTAAGATGGATGCTCCCGAAATCTACGTGGAACGCACTTTGGCAATCTTCAAACCAGATGTTGTGCAAAAAGGAGTAACGAAAGAGTTGGAAGAAATCATCCTGACAGCTGGCTTTACGATACTGCAGGTTTGGTTACCTATAATGTGACAGGAGGCAATTAATTACTACAATTTACGTTTATTTATTAAAACATTAATATAGGTCATACAGTGACCCGGAAATAAGATTCAAAGAAACGGAAGCAGAACTAGTCTAAAGGCGAAGTCCAGACCAAACTTAGTAAAAATCAAATTTCAAAAGAGCAACACTCCACGGCACAAGACTACAACTTGTCTTTTTCATTGTTTAATAGAAGTGCCAGCCTAATATCTGGCCTTGGGGTGTTAATCTGGATAGTTTACTTTTACTTAACTAATAGGAAACTACTTTTGTTCGGTAAGAATTCTTATAAATTAAGCAAAAAATAACTATAAATTAAGTTAATTTATTCAAATTATACACACAAAGGGTGAACAAACAAGTTTGTTGACCTACAGAAACCTAACTTGCCTGGAAGTGTGTGTGTGTGTCCATGAGGCTGAGTATTTGATTTTTTTCTGTTGTATTATATAACAATATATACAGAGATTAATAGCCAAGTTGCAGTGTGGATGATATAGATGTTTTGGTGTTTATAGAAGAAACGTCTTGTTATGACACCGGAGCAGACAAGTGACTTCTATGCAGAACATTATGGCAAGCTGTTCTTCCCTAGTCTTGTCGCCTACATGAGCAGTGGTCCGCTGATTGTCATGGTTCTTGCCAAGGCCAACGCCATCACGTACTGGCGTGAATTGATTGGCCCAACAAACACAATCAAGGCACGACAGACGCACCCTGATTGGTATATATTATTTGAAGCAACAAGTTGGAGGAATTTTTTTGGTCATGTATTTTCTTAGATATAACATTATGATATATAACGTGTGTGTGTGTATAACAAGAACATTTATATAGTGTCGTTACATGGACGAATCCATTTGAATGTGCTTATACCACATATACTTGAATAAAAATTGTAAGTTATATAAGTGATTATAATTTATTTGATACTTTCGAATCTTGGTTACCACAAAACATTTAGATTGTATACAAGACATTCAGAAAGTAAACGCTAGTTATGAGAAGACAGGTGGCAAACTGCAAGTTCCTCGAATCACTGTTTTATTTTCGGGGTCACCCAATTCCCATACTCAAAGACTGATGTAGACTAACCATGGCTTGGTTCCAGGTGAAGGAAGAGACACTATCAGTTTGAAGAGTGACAATGTACAAGAAAATATATCCAGTTATTGCTAGCATTTGTATATTTGCACACTGTTAAGACCTGTTAGATTGACATGTTTTTGTTTTTTAGTTTGAGGGCCATCTACGGAACTGACGAGACAAGAAACGGTTTCCATGGCAGCGACAGTCTCTACAGTGCTGACCGAGAAATTAGGTTCTTCTTTTCTAACAGTAAGTTGATGATTTGGGTATCTAAACAGTTTGTTTTAAACAACAAGTCTAAGTTTCTTGGCAGAAACTAAAGAAATTTAAGAATAGAAGAGTATTTAACAAGGCATGTGCCATCCTGACAAAATATAATGTATATGGATTTTAATTGGCATGATGTGTTCACATAGCTGTAACTTTTTATGGGCAGCAAATGAATAATTGTTTCTAGTTTCTTCTTTATGACTCTATATTAGTGGGATGCAGTAGTGTAGACTTTCAATCAAGAGTTTGAATCCTCTTCTAGCCATTGCAAGAAGAGGATGTAACTCCATGTTGCTCCAGTTCACTCAACTGTATGAATGGGTATCTGAATATAGACAGTGGTGGATGTTTGTGTACGAATAGTCTATGAGCAGTAATTGCACAGTGGCTGACTGCTTCCTAGAGAAGTTGGGATGGTGCTTGATTAAACAGTTCTTCCACGGAATGAAGTGTAAAGCACTCTGAGCAATACTAAGGACTTGATACCGTGCTGTATAAAAACATACCTTTATATTAGCTTAACAGACTTTAACTAGAATGTAGGTTGGTTGTTGTTGGCAGTGTTGCTAGTTGTTGCAATTAATTACCAATGTTACTGTGACTTCAGGCATTGTGGAGCCAATTCCCCGAGGTCAGGTCGCGAGAGACTATGTAGCAAAGGCGATTAACCCGACCCTGTTGGCAGGACTGACTGCGCTATGCAAGGCAAAGCCCATCAACCCTGTGGTATGTAAAACATACACCGCAACACTAAAACGTCAGGTCTGTTTACATTGATTTGTAATACATTAAAATAGGAAAGAATTGTTCAAGTCAGATGAGACCAATATATTTTAGGTAAATACGACTGTTTCAAAAAAATGCAACGTTAACATATGATGAATAGTTTTTAGTTTATATTAAAGCGTATATATATATTAGAATGTAACCTTGTCAATATTAAAGCATTTCTCTGTATATAACTGGGTTGGTATTAAAGCATATCTCTGAAATAACTGATTAGATAATAAAACATATCTCTAAATATAACCAAATCAACATTAAAGCATATTTATGATTTCACTATAACTGCGCTGATACCAAAGCATATCCCTGAGTATAACCGAGTAGATACTAAAGCATATCTCTGAATATAGCCAGGTTGATTCTGAGGCATATCTCTGAGTATAACCAGGTTGATTCTGAGGCATATCTCTGAATATAACCAAGTTGATTCAAAAGCATGTCTCTGAATATAACCGTATCAACACTATAGCATATCTCTGAATATACCTGTGCTGGCACTAACGCATACCTGTATCTGCAGCGGTGGCTTGCTGATTGGCTGATGGAGAATAACCCGAACAAACCGGACGTGCTGGGACCAGACATTGTCGAACCAGTCGAAGACAACATCTACTTGTATGATGATGACGCCTACTCCTACTCCAAGGTCCCTTACATCGAATCCGAGGTCACACAACACTCCAAGAAGACCGAGTCAGATGCCGAAATGGTCGACGCATCGAAGACCACGTTGTCTTCTTCCACAACTGCCCCGTCATCAGATTGACGAATTGACATTTGTCATGCATTGGTTGTGTGTGTAAACAGTATGTAAACTGGACGGTCTCCTGACGGTCCTAGGTTGACTTAAATACATTGCATGGTTTGCAATGGTGCAAGTTTTGAAAAGTTATATATATAAATGTGTATTAAATGTTTTGTCTCTTTGTATACCATTGCCGTATTTGATGTTGCTGTAATTAGCTGCTGTGAGTCTTGAGAAAATAAATCATTGGTTTCATCTTAGTTATATCCGATTTTCATGTGATTCAACTTATTATGACAACTAGCAAAATACGCATCCTCTGGAATGAGAGTAATTTGGTTTTTCATAAGCAGCTCTAGGTGATCGTTTTTATGGTCTGATCAGAAACCATCCAGTCCTTAGTTTGACAGTGTATACCAGAAGGCGTTATATGCATAGACACTGGCTTTATAATATTCCAGACCTGGGGCCAAAGTCGGTACTCATGTACTCGTACTCACGAAATGAAACTTGTGGGTCATGTACTCGTACTCATACTCATTGTACTCAGATTTTACGAGTACATTACGAGTACATCTGAGTACTTTCTCAATATGTACGGGAGAAAATAAATATATTTGGTTATAAAATGAAACTTTCCTGAAATATC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00334	NDK	Nucleoside diphosphate kinase	Domain	Interproscan
PF05186	Dpy-30	Dpy-30 motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001564	Family	Nucleoside diphosphate kinase	Interproscan
IPR007858	Conserved_site	Dpy-30 motif	Interproscan
IPR023005	Active_site	Nucleoside diphosphate kinase, active site	Interproscan
IPR034907	Domain	Nucleoside diphosphate kinase-like domain	Interproscan
IPR036850	Homologous_superfamily	Nucleoside diphosphate kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46161	NUCLEOSIDE DIPHOSPHATE KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003341	Biological Process	cilium movement	Interproscan
GO:0004550	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0005929	Cellular Component	cilium	Interproscan
GO:0006183	Biological Process	GTP biosynthetic process	Interproscan
GO:0006228	Biological Process	UTP biosynthetic process	Interproscan
GO:0006241	Biological Process	CTP biosynthetic process	Interproscan
GO:1902176	Biological Process	negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf12639_2.15 global RNA-seq network