Gene detail

Detailed information of PE_Scaf12358_1.6 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf12358_1.6	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Superscaffold2	51764919	51768131	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf12358_1.6

ATGAAAACCTGCATGTGCTGCCTTTCAGATTTCAACGAATGTAGTGCGGCCAATGACTGTGACAAGTTGTATGGCGCTTGTATTGATATTTCTCCCACAACTCGCAAGCTAGGATACAGGTGTGAATGCAAGATTGGCTACGTGGGCGATGGATTTATATGTACAGGTACATCGTTTATGTCATTTTATGTTATATGGCTGTGGGTACAAAGAAAAAAACCGATGTACCGTTGCATATTCAAATGTTGGTTGTATTGGTTACACTTTGCCCATATTTAAACTAACAATGGTGTACTAATTTCGTATCTACATCAGTTGGATTATATTGTTGTCCTCCGTTATGATGTATTGTAACTAAAAATATAGTTTTGCGCAACACATTTACCGGATAAAGTAATATTAAAATGCACATAAAGTCACATATAAACGACACATCATAGAATAGTAAAATCATCAGTAAAATGACGGCAAAAAAAGCTACATCTAAAATGCAGACACTTATGTTCTATCGGTATAACACATGTATATAAGTTAAACGACACAGTACGGACACATTTGCATTGCATGCCACGCTGTTGTGTGTAGTGTACTATTTGTGGAGGGTGTTGATCAACTGGAATATTTTACTGTTGCTAATTTGAGCCTGTCATTTGTTACAGAGGTGAACGAATGTCTGGCGAAAAACCGTGGAGGCTGTGAGCAGGGTTGTATCAACAAACAGGGCGGTTACGAGTGTTTCTGTGGCAGTGGATTTCTACTCAATGACGACGGAAAGACATGTAGCGGTATGTCAGGTCCTCTCAATGTTGAAATATACAATATCATCATCCTTAATCATGAATATATGTTTCGACGTGCACTCTTATGATCACCATCATACACCATGAAACCTCGCCGTATCAATATATTTTAACGAGAACCACTTGGTGTGGTTACGAAAAGTCGAGAGTTTATTTTGTGTAACTAATGTACATTGAATTGTATTGAATAAAAACACTGATGCAAGAACGTACTGTGATATACTAATCAAGGGAAACGGTCACGCGACTCCCGTTAAAGCATAAGAACGGCAGTATCACAAGAGTCACATTTTGTAACAATGATATATGGTGTAATAATAAATATAAACCGGTTTTTAAATAGGTAATATTGTTAGGGAATTATTATAGAAATATGCATTACGCAAAACGCCTATGCACACTACGTACACAACGAAATTTACTTGTTATTGAGTAATATGCAATCGCCGGTATGCCCCTTCTCATTTTCTAAAAAGCTGGCCTAATTCTTGATATAAAACATATTTTGAAAAAAGCACAATCTCGCCGCTGTTTGTCATTAAGACTGACCTTCTCTGCATTTCATTTTTATATTATATAATGATGTTAAAAGTGTGCTATCATAGATATGTCGAAGGCGTTCCCCCAGCGAAATTGCAATTAATAAACCGAAACATTTTTCAAAGTCTGCATTTTGTGCTTGTCCACATTACGCTCATACATGTGATTTTGGGCAACGGAAGAAATAAGGTCGATTTAAAAGGTGCGTGTGACACACGAATGTACCAGTATATAATGTGTATGCAGATATCAACGAGTGTATGAACGACGCAGACAATGAGTGCTATTCGAGCACGTTCTGCACCAACATAAGAGGCGGGTACACGTGCAGCTGTCCCAAAAGACTCAGGCTCAAGGCTGACGGCGTCACATGTGAAGGTAACAATAGACCCTGCATAACACTAACAAATAATGCATTAATCCCTTTAGAGACCGTCTTTGACAAATTACGGACGTGTTGTGAGAATGTGTATGATTTAACTTTCATCATCTATATAATAATTCGCAAACTGTGGATCATCGTAAGTATGTTTCCTCCGAGGTGTCGATGTTCACTCGCCTCTTTTTATGTTATTTCGCCTCCTTTGATCGTTGACACCTGACTTACCAAATGGCGATCTATTTCACAAAACACACCGATGTGTATTTAGCTATTTATTTACGTGACTTTGATGTGTTATGCTTTCCTAGACCGCCTTTCTCCTTTCTGACATAACTGAGTTGTCAACCACTTTCATGTATATACCACCATTGTGGAAACGAGTTTTAAACTATAACATTATTGTAATGATAATAACTACTACCTCTTTCAGTGTCTTCATGTAACTGTGAAGTCACAGTCAATTATCCTGATCACATTCTTCCTTGTCTTCACCGTTTTTATTGGTGTGTAATAATTTAATCAGGAAGGAACAACGCATAATCTGATTTAGAGTCAATAACCAAACGTTACCGACATATCCAATACGTGAATTTACCTATTGGATATGTTTTAAAAGAACTAATTTGCATCGGAATGAACTATCATGAAGAATGGTCAACAACGTTATCGACTTAGTCTATATTCGCTTTTTCGCCAGCCAACTAATGTCATATCTGAAGGATGTAGCCAAATAATTCTTGATGAATTTCATGTCACATGCGATTACAGAAAGCGTAGCATTTGTATGTATTTATTTTGCGCCGAGCTATGTTTTCCGAAGGTATTGATGTCAACGATCACACCGTTATTATCGGTAGTAGTACTAGTAGAAGTAATTATATAATTCAACGATTTACCCGCAGCTGAAGAGCAATGCCCTAGTGATTACGGATGCAGCTACCAGTGTGCCATCTTGGACAGCAAGTACACATGTCTGTGCCCGTCTGGACAGAACCTCGCTGACGACGGCAAGTTATGTCAGGGTGAGTGAAAGAAAGATACGTTCGTCCGTGTCAGATTTAATATGTTTCAAGCAGTTGTATTCGCACAGTTGTTGTCTATGTGGATTCCACACAGATTTCACACAAACTAATGCAAATTAGCAATACGTTATGCAGTGTGGTGTAGTTTTGGTTGGCGAATACCTTGTTATATTGAAACGTTTAAATTGATAATTAAAAGGAAAATATGTACGAAGTTAATGTATTCCACATGCTATTATATGTTTCAGACATCAATGAATGCAGCGACTCGTCACTTCACAACTGTCTGGCTACCAACTTCGTCAAGTGTGTGAACCTCGACCACAGTTTCCAGTGTGTCTGTGTCAACAATTTTTACATGCAGATAGAAAATAATAGATGCATAGGTAGGACACGTGATGTATGCAGGCAAACATCGATTTTACGTAGCTTCATAAATACACCCTTCGCAGTAACTTACATGCCGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF12662	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR026823	Domain	Complement Clr-like EGF domain	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR050751	Family	Extracellular matrix structural protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24034	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf12358_1.6 global RNA-seq network