Detailed information of PE_Scaf1224_1.5 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf1224_1.5KU AUTOANTIGEN DNA HELICASESuperscaffold36605166566077848+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02735KuKu70/Ku80 beta-barrel domainDomainInterproscan
PF03730Ku_CKu70/Ku80 C-terminal armFamilyInterproscan
PF03731Ku_NKu70/Ku80 N-terminal alpha/beta domainDomainInterproscan
PF08785Ku_PK_bindKu C terminal domain likeDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR005160DomainKu70/Ku80 C-terminal armInterproscan
IPR005161DomainKu70/Ku80, N-terminal alpha/betaInterproscan
IPR006164DomainKu70/Ku80 beta-barrel domainInterproscan
IPR014893DomainKu, C-terminalInterproscan
IPR016194Homologous_superfamilySPOC-like, C-terminal domain superfamilyInterproscan
IPR024193FamilyKu80Interproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR036494Homologous_superfamilyKu, C-terminal domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR12604KU AUTOANTIGEN DNA HELICASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000723Biological Processtelomere maintenanceInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0003684Molecular Functiondamaged DNA bindingInterproscan
GO:0003690Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006303Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0042162Molecular Functiontelomeric DNA bindingInterproscan
GO:0043564Cellular ComponentKu70:Ku80 complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf1224_1.5 global RNA-seq network
TOP