Detailed information of PE_Scaf12167_13.6 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf12167_13.6SMALL NUCLEAR RIBONUCLEOPROTEINSuperscaffold43520436035214177-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR034098FamilySmall nuclear ribonucleoprotein GInterproscan
IPR044641FamilySm-like protein Lsm7/SmGInterproscan
IPR047575DomainSm domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000387Biological Processspliceosomal snRNP assemblyInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0005687Cellular ComponentU4 snRNPInterproscan
GO:0005689Cellular ComponentU12-type spliceosomal complexInterproscan
GO:0034719Cellular ComponentSMN-Sm protein complexInterproscan
GO:0043186Cellular ComponentP granuleInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0097526Cellular Componentspliceosomal tri-snRNP complexInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf12167_13.6 global RNA-seq network
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