Gene detail

Detailed information of PE_Scaf12158_8.7 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf12158_8.7	FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145	Superscaffold6	17912878	17917747	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf12158_8.7

AACGTCGGCAACAACGTTGTAAACATGCAATATGTTTGAAAGTTTGCCTTCACTTTGGTGTTGTGGAAATGTGGTCGCTGTACGTTGTCGGGGTAAAGGACGCGGTTGAACCAATAATGTTGAGCAAACTGAATTTAGTGTTGATATGTCTTAGTAGTGTTGTTGTTGCTGTATTCGTTAGTTTGATGCCGGAAGCGTTGACGCTTTGGGGATACTTGGGCGGCGACCGACGTCCACTGGCACTGGGCATCAAGTTGAAAGAGGAATTCGGCTGCGGCAGCAACAGTCAACATGCTCTTACATCGAACACCCTTCAGCTGCATAAAACGACGATGTTGCAGGTCTCCCAAGCGTCACTGCAACGAAATGATGGTATAATAAACATGTTAAATTAAAACAGAACTTAGGGGGCGCGCGATAGTGTAGTGGTTAGCACATCCGTCCCGAGTTCAATACCCGGACCTGGCAGGTATGGAATATTTGGTGTAAAAACCTGGCTCTCAACATTGGCGATTGTGTATCCCTCGTGACTCGGAGATCACGTTAATGTCGGTCCCGTCTCAATTTGGGACGTAAAAGTAAAAAGAACCACTGAGGACGACAAGCACCCTGGCAGTGACCACCCTCAGTGCCAGCATATAGAAAGGTCGGCTTGCCGATAATCTTCTGAAAAAGGCTGACTAGTTGAATGAGACCTCATAAGATCATAACATATAACCACAATATATACAGACTAGTCAGTTAATAGAACGTTGCCGAGTGCCGGAAACAACTAGAACTAGTATTCAGCTAATTTATGAATTTGTTACTTGTCTTATCTGTTATGTTATAACTGTAGAATCCGGGCCCACCTCGATTTTACTGTTATAACTATAAATTTGATATGTCATTGACAGTGTCTTAATTCCGTCATTCCACACACCATCCCAGGCATATTTACATCAATTATAAAAATATTGGTACCAAAATATTGAATCTTCGGCATTTTTTATATGCCTACTTGGAATAGCACAGCAGTTTGTGCCAGGCCTAGTCTGCACCTGTGTGTGCCGAACAGTTGGTCTGGGTTGTTGACCAGACCACTATTTAGGCCTCAAAAGTGCACCAAAATGCAATATTTTCATAACATAAATATGCCTCCAGGGGATGACATGGAATGATTGAATCTACTCACAGATGAATCACATTTAGGCAATACATATAATTTTATAACATGGTGGTGGGCCAGGATTCTACACTGTTCTTCCTGCCTTGTTCCCTAAACAGAGATAAGGGTCAGGTATAGTACTTGTCAAACTACTCTCTCTTCTTTCTGTTAATAACTTCTTGTCAGCAGCCCCCCTCCATCTTTCATCCTCACCCGATCATCTCGTGGCCTCCTCACACAGTCCTCCCATGATACATCAATAATCATGAGATGCAGAATATATATATACATAGATGCATCACCAAATTATAAAAAATTAACATTCATTTTTAATACTTTGAGTGACCATTTTACCCTACCTTAATGGAAAAATCTGTTCCACGTTAATTCAAAGTGAACTTGTCAAAAGTGTATGTTGCATCCTGAATGATGAACAATTCATATTTTTTAGAGTTAAAAGGTGAAGCTCTGGCAGCACTGCATCTTGCTCAGGAACATCTAAAACACAGCAAGAAAGAGAAAGCTCTGAAACTTTACCGACATGCGCTGGCACTCGCACCGAACCATCCGGATGTCTTAAATGAATACGGCGAGTTCCTGGAAAGAAATGAGAAAGATGTGCTAACTGCTGAACACTTGTATTGTCGGGCACTCATCGCAAGCCCCACTCACTCGAGGGCATTGCAGAACAGGAAACGAACATTGCCGCTGGTGGAGGAAATTGACCATAGCTCGTTTAACCGAATTGACCAGAAAAGAGACGTACTGGTCAAAGTGCCTGACAGTCACCCGGCGATGAGACGTATGAAGAAGGAGAGCTACTTCCACCACATCTATCACACGGCAGCCATCGAGGGCAACACGTTTACATTGTCGCAGACAAGATCTCTGGTTGAAACGCGCCTTGCCATCGGTGGAAAAAGCATCATGGAACACAACGAGATCCTCGGTCTCGAAGCTGCCCTCAATTATGTGAACAGTACGCTTGTGCATCGTATCGGTGCCGTGACAGTCGGCGACATACTGAACATACATAAACGCGTGCTCGGGTTCGTCGATCCCCTCAGTGCGGGGGAGTTCAGGACTACGCAGGTGTTTGTCGGGTCATTTGTGCCCCCAGAAGCGAAGGAACTCGATAAACTGATGCAGGAGTTTGTGCTGTGGTTGAACTCGGACGAGGCGATGAGCTTCCATCCCATCGAACTTGCTGCCCTGGCTCACTATAAGCTTGTGTCAATACACCCCTTCTATGATGGCAATGGTCGCACCTCCAGGCTGCTGATGAACTTCATCCTGATGCAGGCAGGGTACCCTCCAGTCACCGTCCGCAAGGAGGACAAACTCGAATACTACCAGCATCTAGAGTCGGCGAATGGCGGAGATGTTCGGCCGTTCATCCGATTCATCTCGCGCTGCACGGAACGAACGCTGGACGAATATCTCTGGGCAACCACAGAGAACTCGAGTGTTGTTCTAGCTGATATCAGACGCAAAGAGGTCGACAGCCGAACTATTATTATTGAGCACCATTCATCTAAACCATAGCCAGCCATAAATGTGTCTGCTTTCTGTGCAGTAGATTGATGGTGGATATGAAATTATGCTGTGGCTCAACACTATGTTTGGATGTTTCTTGGTAAAATAGGAAATTTCATGTAATCTTCATCACAGCTGGTAGTAGGATGATGTCGGTGTAAATCAATGTTATGACACATCCAAATTATGAATAATGGCAGAGAGATAAATGGCTGTGTTTTCTGTAACATTGGAATAAATGGTCTAACATATTTATGTTATAATGTATGATACTGCAGAAATTAGGACTGTTTCACTGGTGCTTATCGAGTTGCTGTACATGTGTTGAATGTTCTGAAATGGGGGTAGCTGTCATTGCATGCAATGATGTAGAAGCGCAATTATTTATGAAAGAATTCTCAGGCTATAGACCAGATGTCATTTTTGAAAACATCTTATCAAACAAGCTGATACGATGAGTGTGGAAACTGCGATATATTCCATAAAAGAATAGGATGATGCAAATGTTTGCGGGAACAAACAGTTTACATGTCTTCACCATCATGTCTCAAGGAAAACTGAAAGTGGGGAGGTAAAAAAATTGCAAAATGGAGTCCTACGCCACTGTTATGGAGATTTGTGTCTGTGTGGTCATATGGGCAATATCTGGAACTCTGCAATTCCATTTTAAGAATAGCAACTTTTGATTATGCGTGGTTATCACTAACCTAACATTGTTATTCAAAACTGCCTGGTTTATCAATTTATATGTCAACAATCGCATTGCAAGTTTTGTTTGAAAACATTTTAACGAAAAACATGTAACCATGAAATGTATATAAGAACGACTATTATAACTTATTCTGTAGGTTTATTGTATACAAATGTTTATTTTTGAAGGGCCTAGTATTTCAGAGTGCTAGTATGCAGATATGAGTAATGAAACTGAAATATTATTACCCCCCCCCCCCCCGGTATATAGATATATATGTAGTGAAACCGAATTAGATCATTATTTGATAACTCATTTTATTATGGAATCACATATTTCTGTGTAGAGGGAAAAAATATTGATTTGCCATAAATGTCTTCATTCTGTGAATCATCAATTGGCTATTCTTTGTAATCCAACCAAACCCACAGGATTCAAAGAGTACGTACCACTGTACTATTCATGTAATGAGTATTCTTTTGGATATGTTTAGTTTCTGTGGTTCATACAGTACATAACATTTATTCAATAATAGCAATATACCTTTATATGTTCAAGGTACATTTTGCTATCCTGTTCACATTTTGTTGATATTCTCTTATTCATTATCTTTAACAGATATATCATTTATTGAAACACTTCTATTTAGCATTTCATGATCTATAACAGTGATTATAAATGCAGCAAATACAATACGTCATAAGTTAATGTAGTATCATTAATAATTTGATTGCTAAATATTATTTACTTAGGCCTTTTGCCACAGTTAATTTGTTTTGGTGTACCCTAAGTCCCTGATTATTTTGAAAAAAAGGAAAAGACCATAAATTTCCTTCAAGAAAGAAACATAAAACCGAAGACTTCCTACTAGTGTTTCACGTTGTTTTGCCACATTTAATTGTCAGTGCCATTTTGCTATGTAATCGTGTAATCCATATCAGTGGAAGTTGATATTCAGTGGTATATAGTTGGCTACTTAAATAATCACATTTAGCTGATCATGGCCATTCTCTGGAAACAGAAACTTATTCTACAAACAACATTCTTTAATTAAAAGAAACCATTCATTATCTAGATGAAAACATTGGATCAAGCTTGTTTGCTGACTGTTAATGGTAATGGCACATATATGTTATGTTTATTTATTTATCTTTGTCTGATGCTGTTGACTGTGTTGGATGCCAAGTACTTGCACAACTTGCAGGATATATGAAATAATGGGCTATATTGTTGAGTATTTTATCACAAAAAGCAGTATAATTGTGCGCACAAGTTCAGGCTGTGATATGATTGTATTATTGTGTTTAAAACAACCTTATAGTTTTGCTTCATCACAATAAAGTTCAGTTATCATTCAAAGACATAAGAAAATAAACCGCAGTGTTCTGTATTGAATGTCAATTATGCAGTAGTGCTTTTAATTATTTTTGAATAATGCTAACTATTAACAACATTTATATAAATTGTCACAATTTCTGTGTAGTAATATAAGTTGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02661	Fic	Fic/DOC family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003812	Domain	Fido domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR036597	Homologous_superfamily	Fido-like domain superfamily	Interproscan
IPR040198	Family	Fido domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13504	FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf12158_8.7 global RNA-seq network