Gene detail

Detailed information of PE_Scaf12152_0.1 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf12152_0.1	ATP-DEPENDENT RNA HELICASE DBP3	Superscaffold4	4149728	4153364	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf12152_0.1

AACACTAAGAGGGAGCATATATATGTGTTGTGTAATATTTTCAACTGATCTAACACTAAGAGGGAGCATATATATGTGTTGTGTAATATTTTCAACTGATCTAACACTAAGAGGGAGCATATATACGTGTTGTGTAATATTTTCAACTGATCTAACACTAAGAGGGAGCATATATACGTGTTGTGTAATATTTTCAACTGATCTAACACTAAGAGGGAGCATATAGATGTGTTGTGTTTGACAGCTATAAAAGAGACTGACTGAGAGAAAGAGTTGAAGGAAGAACAGATGATCCTGGACGTCATTGCAGAGAAAACAGGTCAGTCATGTCTATATTCTGTCTTGCTGTGTGCTGGAATCATAAGTTACAAATACTTCTGTAAGATCAAATTCAAAGAGAAAATATATGTCGTAGCAACGTCATAACTGATAGACAGACAGGCAGACAGAATTGTTTGATAGAAACAGTAATTTAACTTATATTTTAAAGGTTGGTCACCATCATAGTTGTAGCTTATGAAATGTGAAGCTATCACAGTTGTAATTTTTATAATAATAATAATAATGTCAACTTGTAGAGTGCCATAATTCTAGACAAAAGTCCATTCAGAGGCGCTAAAATAGATTAATACATGAATATTAAAACAAGCTAGTTAAATAAATGAATTTTTGTCATGATTCACTGTTGTGTTCAGTTGGAGACCTCACCGCTGCATCCTGCGACAGTCAGAGAGACACCACATGAAAGTGAGGAACAAACTGCACATCCTGACTGAGGGGGAGGACTTACCGCCACCAGTCAGGACATTCAAGGTGACCTACTCATTCTTCCTGTCATCTTCATCTTTCGTCTCGTTTCAGTATCACTTCCCGAGACATCAGACTACATGATAGCAGCTTGTCTGTGTAAATGTCTTCCTGCCATCTTCATCTTTCGCCTCGTTTCAGTTTCACTTCCCGAGACATCAGACTACATGATAGCAGCTTGTCTGTGTAAATGTCTTCCTGTCATCTTCATCTTTCGCCTCGTTTCAGTTTCACTTCCCGAGACATCAGACTACATGATAGCAGCTTGTCTGTGTAAATGTCTTCCTGCCATCTTCATATTTCACCTCGTTTCAGTTTCACTTCCCGAGACATCAGACTACATGATAGCAGCTTGTCTGTGTAAATGTCTTCCTGCCATCTTCATCTTTCACCTCGTTTCAGTTTCACTTCCCGAGACATCAGACTACATGATAGCAGCTTGTCTGTGTAAATGTCTTCCTGCCATCTTCATCTTTCGTCTCGTTTCAGTTTCACTTCCCGAGACATCAAACTACATGATAGCAGCTTGTCTGTGTAAATGTCTTTTGCATTTTTATGGAAATTGTTCAGTTGTTTTTCACTGGACACAATTGAAATTTATAACAAATTGCAAGATTGGTCGGGCCCAATATACTACGGCTCATCATAGCGGACTCTCAACGAGAGAATCCGCATTTAAATCCTGCTGCTGTTTCGAACCATGGACAATTTTGTTCACTCCACATTGCTTCAGTTGACCAGCTGTATAAATGAATTCCCAACTACAGACATGGGTGGATGTGTTTGAATCAATAGTCTACCTTCAGCTATTGCAGTTTGCTTCCCAGAGAAGTCGACCTGTTGTTCACTTGAATAGGTCTGCCAGGTGTTAAAGTATTAAGCGCGTTGAGAGGAGTGAGACTTGAACCATGTGAGAATTAACCCTTTATAATGCATGTTTCTGTCAGCAGGAGATGAAGTTCCCAAAGTCTCTCATCAGCAAGCTCAAGAAGTGCGGCATCACAAAGCCTACGCCCATACAGATCCAAGGCATCCCCACTGTGTAAGTCAGTGGCAATTGTGACATTGCTCATAAGAGTAATATACGGGCAGTGTTCGAAAGTTGATCTGAGAAGTCTGTGGTCCATTGGACATTCAGTTTTGTAGAGTTGGTGGTCCAACTCAAAAGTCGGCTGTTCAGATATTAACATGTAAAACCAGTCTTCAAAACCTGGGCCCAAAAGTTGGTGGTCCTACTAAAAAGTTGTCGATTTTGGGTCTCTGTATTGGCAGTAATTTTGGACTTTGGACTGTATATCTAGGATTTATTCACGAAGATCCGTATTTATGTAGACAGTTCCATATTTATTAAACTTATCCACTTTTATTCAGACATTTTTCCAGACATGTTCATATTTATCCAGACAAGTCCACTATATTTATAGTGATCCAGACTGATTCATATTGATTAAGGTTTATTCCCAAATTCTAAATGATTCACAGTGATCCTTATTTATTCAGTGAGGTCCAGAATTTGGGTTAAATTGGCAAAGGTCATACCCATATATTTATTATGATCACTCGGATTCACTCAAAATTTCTTGGAAGCAAAAAATTATAGTCTTTGAATCATAGATTTGTCCTTAAAACCCACATCAATCCTAAGAAATCAATACTTGTCATGATCCTTAGATGTTAGAATCCAATTGGAAACTAAAATTTATTATTGATTGATAAGTGGCATTATGTTTTAAAAACAAATGGAGTGGATAATAGAAACCAGTATGTGTCTAACTGATTTAAAATTAAATTAAATAAAATTTTCTTATCAGAACTATTACATTTAACTTACACTGTACTTCAACATTTTGGCTACCATCAGTAACCTACTTCAGGACAGCAATTCCTGATGAAGGCTACCAATGGTGCCTGAAATGTTGGAGCAAGTTAAACTTCCTAGTTGAGATAAGAACATAATTTGGTTCGGTTTATTCATTCAAGTCGATGAACATTTTAGGCAACGTTTAACGGATGTTGTATGTTGTTGTTTGCAGGTTGATGGGTCGGGACATCATTGGCATTGCCTTCACCGGGTCTGGCAAGACGCTGGTCTTTGTGCTGCCTCTTATCATGTTCTGTCTGGAACAGGAGAAACGACTTCCCTTCATCAGTAACGAGGGACCTTATGGCCTCATTGTGTGTCCATCGGTATGTGGCGGTTGTCCTTGTAGTCATTTCTCTTCATAGTTTTATGTACAGACCCGACCACTCGTCATTTGGACGGGTTGATTTAATTTTAGATGGATAAAAATTGGAGGAACAAAACAAAAACATAAAACCTTATTATATTATTGGCTCTCACTGTTACTTAAATGTCCATTATGTTATACAATTGGCTCTCACTGTTACTTAAATGTCCATTATGTTATACAATTGGCTCTCACTGTTACTTAAATGTCCATTATGTTATACAATTGGCTCTCACTGTTACTTAGATGTCCATTATGTTATACAATTGGCTCTCACTGTTACTTAAATGTCCATTATGTTATACAATTGGCTCTCACTGTTACTTATATGTCCATTATGTTATATTATTGGCTCTCACTGTTACTCATATGTCCATTATGTTATATTATTGGCTCTCACTGTTACTCATATGTCCATTATGTTACATTATTGGCTCTCACTGTTACTTATGTTTTTAACATATGTGTCTATGTATATATTGTTGTCTACATATGAAGTTATTTATATATAGTATTATCCACATTTGGACCTGATTTTATGTGTGCGCATGGAAGCGTGTATGTAAAGGGACATTTTTGGACTAATATAAAATTAACTCTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf12152_0.1 global RNA-seq network